Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H07
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490... 71 8e-13
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 57 1e-08
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 40 0.002
03_06_0651 + 35297560-35297895,35298881-35298991,35299670-352997... 38 0.010
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 33 0.21
03_02_0342 - 7645323-7645909,7646323-7646491 25 7.2
11_04_0448 - 17834712-17834809,17835570-17835622,17835721-178357... 28 7.8
>10_08_0659 +
19647037-19647464,19647569-19647659,19648998-19649039,
19649179-19649237,19649559-19649634,19649735-19649866,
19650251-19650358,19651040-19651094,19651187-19651437
Length = 413
Score = 71.3 bits (167), Expect = 8e-13
Identities = 45/160 (28%), Positives = 79/160 (49%)
Frame = +1
Query: 337 ISDAVSAVQSFAANGEPTFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVR 516
++DA +A ++ A A+ + PV +Q+ +Y+H + WW I L T+++R
Sbjct: 96 LADAAAAAEAVPAPFPGEVAAAAADSFFPVAALQHVIDYIHTFTGLNWWACIALATVLIR 155
Query: 517 VVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLN 696
PL++ + + ++N PE++ ++ +M A + E A+ LF K G++
Sbjct: 156 SATVPLLVNQLKATQKLNAIRPEMEAIKEEM-NAMDPKSAKEGK--AKMTALFQKH-GVS 211
Query: 697 PLKNLIVPLAQTPLFISFXMGLRGMANCPVXSMTHGGLWW 816
P L L Q P+F+SF +R M + V SM GG W
Sbjct: 212 PFTPLKGLLIQGPIFMSFFFAIRNMID-KVPSMKGGGSLW 250
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 57.2 bits (132), Expect = 1e-08
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Frame = +1
Query: 337 ISDAVSAVQSFAANGEP-TFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVV 513
++DA ++V A P A+ + PV +Q+ + +H + WW I L ++++
Sbjct: 109 LADAAASVPVSAPAPFPGEVAAAAADSFAPVAALQHLIDGVHSLTGLNWWACIALTSLLI 168
Query: 514 RVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQE--------MM 669
R + PL +L+Q + M + I L ++ R GN+ + R E M
Sbjct: 169 RTLTVPL-LLNQMKATAMRPEIEAINLEMRTISSTRIAGNEKSSTRVTDEGSMSTDPQSM 227
Query: 670 LFMKEK--------GLNPLKNLIVPLAQTPLFISFXMGLRGMANCPVXSMTHGGLWW 816
L K K G+ PL L Q P+F+SF + M V S GG++W
Sbjct: 228 LEGKRKLGELFLRHGVTPLTPLKGLFIQAPIFMSFFFAISNMVE-KVPSFKGGGIYW 283
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +1
Query: 340 SDAVSAVQSFAANGEPT-FASIGLGGWGPVGLVQNCFEYL---HVTLDVPWWGAIVLGTI 507
+D V + AA+ + A+ G GG V + + L H +PWW I L T+
Sbjct: 107 ADFGEVVATSAASADAAGVAAAGDGGSASGFAVSSLIDILDGFHNLTGIPWWITISLSTV 166
Query: 508 VVRVVMFPLVILSQRNSAQMNNNLPEI 588
+R+++ P++I + +A++ LPE+
Sbjct: 167 AMRLLILPVLITQIKKAAKIGKLLPEL 193
>03_06_0651 +
35297560-35297895,35298881-35298991,35299670-35299744,
35300165-35300225,35300406-35300479,35300564-35300668,
35301099-35301206,35301604-35301707,35302005-35302223,
35302505-35302646,35302694-35302825,35302962-35303066
Length = 523
Score = 37.9 bits (84), Expect = 0.010
Identities = 34/120 (28%), Positives = 51/120 (42%)
Frame = +1
Query: 454 LHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGN 633
LHV P+ AI+L T++V+ FPL ++ M + P Q+K Q R G+
Sbjct: 121 LHVPY--PYGFAIILLTVLVKAATFPLTKKQVESAIAMRSLQP-----QVKAIQERYAGD 173
Query: 634 QIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFXMGLRGMANCPVXSMTHGGLW 813
Q R E K ++PL + L P++I L +AN +T G W
Sbjct: 174 Q---ERIQLETARLYKLSDVDPLAGCLPTLVTIPVWIGLYRALSNVAN--EGLLTEGFFW 228
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 560 ALFLCDKITSGNITTLTT--MVPKTIAPHHGTSKVTCRYSKQFCTNP 426
AL C I TLTT ++ K I P HG S VT +S Q C P
Sbjct: 428 ALSACQSIAFDKTGTLTTGKLMCKAIEPIHGHSDVTNDFSDQACCTP 474
>03_02_0342 - 7645323-7645909,7646323-7646491
Length = 251
Score = 25.4 bits (53), Expect(2) = 7.2
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = -1
Query: 470 SKVTCR---YSKQFCTNPTGPQPPRP 402
S V C+ Y K+F P P PPRP
Sbjct: 156 SPVACKCGKYKKKFMFAPPPPPPPRP 181
Score = 21.4 bits (43), Expect(2) = 7.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 428 PTGPQPPRPMLANVGSPFAAK 366
P P+PP P + + PF K
Sbjct: 205 PPAPKPPAPPVEDEPQPFFHK 225
>11_04_0448 -
17834712-17834809,17835570-17835622,17835721-17835798,
17836020-17836295,17836400-17836543,17836636-17836750,
17836963-17837091,17837214-17837304
Length = 327
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 476 GTSKVTCRYSKQFCTNPTGPQPPRPMLANVGSPFAAKDWTALTASDIV 333
GTSK+ Y+ FC + P P + + N+ + + +L S++V
Sbjct: 229 GTSKILLTYNSSFCLHKLHPPPQKRLNGNMLTGTVPLEILSLLVSNLV 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,426,198
Number of Sequences: 37544
Number of extensions: 440772
Number of successful extensions: 1146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -