Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H07
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81029-7|CAB02698.2| 366|Caenorhabditis elegans Hypothetical pr... 68 7e-12
AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical ... 29 4.0
Z92803-8|CAB07245.1| 814|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical pr... 28 7.0
U97196-7|AAB52462.1| 141|Caenorhabditis elegans Hypothetical pr... 28 7.0
U94835-1|AAC47510.1| 814|Caenorhabditis elegans multiple exosto... 28 7.0
AF067219-6|AAC17030.1| 382|Caenorhabditis elegans Innexin prote... 28 7.0
AB077851-1|BAB83878.1| 814|Caenorhabditis elegans heparan sulfa... 28 7.0
Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF100307-1|ABB88211.1| 317|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z81029-7|CAB02698.2| 366|Caenorhabditis elegans Hypothetical
protein C01A2.3 protein.
Length = 366
Score = 68.1 bits (159), Expect = 7e-12
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Frame = +1
Query: 355 AVQSFAANGEPTFASIGLGGWG-PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFP 531
+V A+G +GL W P + E +HV LD+PWW IV T+ +R ++
Sbjct: 64 SVDELIASGASVLEELGLWTWWKPSSYFRWALESIHVHLDIPWWVTIVAATVTLRALLIG 123
Query: 532 LVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNL 711
+ ++SQ+ A+ + E+ + ++ +AR+ NQ+ + E F++ K + +
Sbjct: 124 VPVMSQKLVAKQSMYRKEMNEFRDRIDEARKENNQLLQQQILLEQRDFLRSKDIRLGRQF 183
Query: 712 IVPLAQTPLFISFXMGLRGMANCPVXSMTHGGLWW 816
+V A +F + ++ M ++ GG W
Sbjct: 184 MVMAANGAVFATQFFAIKKMVVVNYPGLSTGGTLW 218
>AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical
protein F52F10.3 protein.
Length = 684
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 460 VTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPE 585
V DVP+WG V TIV+ V +F ++ +++ +NL E
Sbjct: 166 VEKDVPFWGFTVFLTIVIAVAIFATLLDYVQDAVLGLSNLKE 207
>Z92803-8|CAB07245.1| 814|Caenorhabditis elegans Hypothetical
protein K01G5.6 protein.
Length = 814
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 87 IVILFRRTIIVIHHVQVTKPSWSTQ 161
I I F T I+I++V ++PSW TQ
Sbjct: 23 IFIFFVITYIIIYNVSFSEPSWITQ 47
>Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical
protein K07C5.7 protein.
Length = 485
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 537 HKWEHNNSDNYGAQDNCTPPWNI*SDVQIFET 442
H ++ NN D Y D+ TP W I S + F T
Sbjct: 235 HPFDANNVDKYVVGDDYTPIWEINSLKKYFNT 266
>U97196-7|AAB52462.1| 141|Caenorhabditis elegans Hypothetical
protein B0207.8 protein.
Length = 141
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 672 KHHFLSISCSFNLISSLPGLCHFHLQ*LY 586
K HF + F+ IS LPG HLQ +Y
Sbjct: 54 KKHFSYFAIRFSFISLLPGFSVVHLQFMY 82
>U94835-1|AAC47510.1| 814|Caenorhabditis elegans multiple exostoses
homolog 2 protein.
Length = 814
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 87 IVILFRRTIIVIHHVQVTKPSWSTQ 161
I I F T I+I++V ++PSW TQ
Sbjct: 23 IFIFFVITYIIIYNVSFSEPSWITQ 47
>AF067219-6|AAC17030.1| 382|Caenorhabditis elegans Innexin protein
15 protein.
Length = 382
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 472 HLK*RADIRNSSAPIQLVPNLLGLCW 395
HLK D + +PI L+PN++G W
Sbjct: 159 HLKKYIDRQGRKSPIPLIPNIIGRNW 184
>AB077851-1|BAB83878.1| 814|Caenorhabditis elegans heparan sulfate
GlcNAc transferase-I/II protein.
Length = 814
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 87 IVILFRRTIIVIHHVQVTKPSWSTQ 161
I I F T I+I++V ++PSW TQ
Sbjct: 23 IFIFFVITYIIIYNVSFSEPSWITQ 47
>Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical
protein F02C12.1 protein.
Length = 815
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +3
Query: 474 SMVGCN-CLGHHSCQSCYVPT 533
SM CN C HH C SCY T
Sbjct: 35 SMFTCNLCENHHICASCYNDT 55
>AF100307-1|ABB88211.1| 317|Caenorhabditis elegans Hypothetical
protein T12B5.6b protein.
Length = 317
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 450 FETVLHQSNWSPTS*AYAGKRRFTIRSKRLDCTNSI 343
FE ++H +W F+I S+R++CTN+I
Sbjct: 192 FERIIHLEHWK-------NAEEFSINSRRVECTNAI 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,146
Number of Sequences: 27780
Number of extensions: 412558
Number of successful extensions: 1037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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