Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H06
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   161   1e-40
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   2.0  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   3.4  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   4.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.9  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   7.9  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   7.9  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  161 bits (391), Expect = 1e-40
 Identities = 70/102 (68%), Positives = 83/102 (81%)
 Frame = +3

Query: 156 GNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 335
           G+ + G  +F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+
Sbjct: 6   GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWD 65

Query: 336 DDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 461
           ++TLF YLENPKKYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 66  EETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
 Frame = +1

Query: 241 DRIYMDSLAEKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRN----TSLEPRWCLLD 408
           D + +     K   + D  T      R  HG +  S+  L   +     + LE +  L D
Sbjct: 264 DNLVIAGCRNKSVLVYDLRTKKECVQRFYHGSSICSMQNLDFSQPKLLVSGLESKISLYD 323

Query: 409 SR------RQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 531
            R      R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 324 CRFLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -3

Query: 716  SQHCQESINYITQYIMYQVHNMYSQTTTAND 624
            S  CQES+  + +Y ++ +  ++ +T++AN+
Sbjct: 1152 SNLCQESVALVERYCVHTLEYVFQKTSSANE 1182


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 734 NLTFNHSQHCQESINYITQYIM---YQVHNMYSQTTTA 630
           N+++   Q C E   Y    I+   +Q HN+Y+ TT A
Sbjct: 234 NVSYRSCQKCMEHFLYYGCLIIADIFQFHNIYAMTTNA 271


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 331 GMTTLSLNILRIPRNTSLEPRWCLLDSRRQMSVLTLLPISNLL 459
           G  T SLN  R+ +  SL   WC +  R  +    + PI+++L
Sbjct: 416 GSITFSLNWSRLGQKISLPIMWCSVFDRSAVFWGLVFPITSIL 458


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 49  TIHVVSIKCLKFGDFGRPKKFGCYINYKN 135
           TI   S+ CL F     PK F C   YKN
Sbjct: 115 TIDFTSLPCLIFETLLNPKLFTCKNIYKN 143


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 322 PLALLASEYENPAAWPVFRPKNP 254
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 445 ISNLLPSNFKVIENSIRSIFHNISGIYFL 531
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,578,113
Number of Sequences: 5004
Number of extensions: 78081
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)