Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H05
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    96   1e-20
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    96   1e-20
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   4.3  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   9.9  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   9.9  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/82 (52%), Positives = 55/82 (67%)
 Frame = +3

Query: 111 ITVQKVQGKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVA 290
           +T  K   +    + RRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ 
Sbjct: 24  VTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLP 83

Query: 291 LKRCKHFELGGDKKRK*QMIQF 356
           +KRCKHFELGG KK + Q+IQF
Sbjct: 84  IKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/82 (52%), Positives = 55/82 (67%)
 Frame = +3

Query: 111 ITVQKVQGKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVA 290
           +T  K   +    + RRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ 
Sbjct: 24  VTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLP 83

Query: 291 LKRCKHFELGGDKKRK*QMIQF 356
           +KRCKHFELGG KK + Q+IQF
Sbjct: 84  IKRCKHFELGGQKKSRGQVIQF 105


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 27   PNELKNGERTKTAQDVLQKM*MPQSTQGITVQKVQGKGTL 146
            P+ L+NG R     D + +     STQG   Q   G+G++
Sbjct: 1071 PHSLQNGPRNTYGMDQMTQQMSHMSTQGSMAQGSMGQGSM 1110


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 131 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 36
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 131 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 36
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 246 LRLECADCKVRSQVALKRCKHFELGGDKK 332
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,442,040
Number of Sequences: 27780
Number of extensions: 144214
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)