Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H03
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0842 - 20954712-20957738 32 0.63
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 32 0.63
09_04_0596 + 18857082-18857484,18857572-18857728,18857801-18858221 31 0.83
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 31 1.4
03_06_0579 + 34870958-34874578 30 1.9
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 29 3.3
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 29 3.3
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 29 3.3
04_03_0687 + 18713603-18713962,18715318-18715539,18717068-187172... 29 3.3
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 29 3.3
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 29 4.4
01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148... 29 4.4
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 29 5.8
12_02_0534 - 20103908-20105897,20106314-20107116 29 5.8
07_03_0504 - 18842442-18844668,18845418-18845428 29 5.8
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 29 5.8
05_01_0372 - 2913518-2916562,2916674-2917528 29 5.8
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 29 5.8
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 28 7.7
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 28 7.7
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 404 FDFTLMVVGESGLGKSTLINSLF 472
F T++V+G++G+GKS INS+F
Sbjct: 382 FSCTILVLGKTGVGKSATINSIF 404
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 31.9 bits (69), Expect = 0.63
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 371 EQVHRKSVKRGFDFTLMVVGESGLGKSTLINSL 469
+Q H F ++V+G+ G+GKST+INS+
Sbjct: 4901 QQYHDNQKDLSFSCNILVLGKIGVGKSTVINSI 4933
>09_04_0596 + 18857082-18857484,18857572-18857728,18857801-18858221
Length = 326
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 605 PGFGDAINCEDSWRVCS-AYIDEQ-----FRQYFTDESGLNRRHMQDNR 733
PGFG +N ++C YID+ QY+ D G+ R H DNR
Sbjct: 256 PGFGATMNVLYGDQICGKGYIDDMNVIISHYQYYLDLMGVGREHSGDNR 304
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +2
Query: 269 LKTNDGNKKSPITTVIKIQRDRGERDYIGFATLPEQVHRKSVKRGFDFTL------MVVG 430
L+ G K P ++ + R E + + F +PE + + +G FT+ +VG
Sbjct: 601 LEEKPGIKDEPHAQPLQFKGGRIEFENVHFGYVPE----RKILKGATFTVPAGKSVAIVG 656
Query: 431 ESGLGKSTLINSLF 472
SG GKST++ LF
Sbjct: 657 TSGSGKSTILRLLF 670
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +2
Query: 404 FDFTLMVVGESGLGKSTLINSLFLGDLYKNRKIPDVQDRXXXXXXXXXXXXXXXXRGVKL 583
F ++V+G++G+GKS INS+F D K GVK
Sbjct: 583 FSCNVLVLGKTGVGKSATINSIFGEDKSKTSAF--------LPATTAVKEISGVVGGVKF 634
Query: 584 RLTIVDTPGFG 616
R +VDTPG G
Sbjct: 635 R--VVDTPGLG 643
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 398 RGFDFTLM-VVGESGLGKSTLINSLF 472
RG + ++ +VG G GKSTL+N LF
Sbjct: 44 RGLSYAVVSIVGPQGSGKSTLLNQLF 69
>05_07_0004 +
26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLIN 463
T+ +VGESG GKST+IN
Sbjct: 399 TMAIVGESGSGKSTVIN 415
>05_07_0003 +
26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLIN 463
T+ +VGESG GKST+IN
Sbjct: 422 TMAIVGESGSGKSTVIN 438
>04_03_0687 +
18713603-18713962,18715318-18715539,18717068-18717256,
18717419-18717612,18718193-18718328
Length = 366
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLINSL 469
T ++VG SG+GKS+LIN+L
Sbjct: 158 TTVIVGPSGVGKSSLINAL 176
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLINSLFLGDLYKNRKI 502
T+ VVG + GKSTL+++L DLY + ++
Sbjct: 289 TVAVVGYTNAGKSTLVSALSETDLYSDDRL 318
>06_03_0473 + 21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 422 VVGESGLGKSTLINSLF 472
VVG +G GKSTLI+SLF
Sbjct: 1001 VVGRTGSGKSTLISSLF 1017
>01_02_0042 -
10513799-10514152,10514252-10514545,10514630-10514893,
10515019-10515285,10515363-10516207,10516311-10516584,
10516694-10517219,10518009-10518247,10518370-10518591,
10518689-10518864,10518962-10519358
Length = 1285
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +2
Query: 305 TTVIKIQRDRGE---RD-YIGFATLP-EQVHRK-SVKRGFDFTLMVVGESGLGKSTLIN 463
TT +K RG+ RD Y + T P EQ+ R S+ T+ +VG+SG GKST+I+
Sbjct: 382 TTGMKPDDIRGDIEFRDVYFSYPTRPDEQIFRGFSLSIPSGTTVALVGQSGSGKSTVIS 440
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 416 LMVVGESGLGKSTLINSLF 472
+ +VG GLGK+TL NSLF
Sbjct: 189 ISIVGFGGLGKTTLANSLF 207
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 416 LMVVGESGLGKSTLINSLF 472
+ +VG GLGK+TL NSLF
Sbjct: 189 ISIVGFGGLGKTTLANSLF 207
>07_03_0504 - 18842442-18844668,18845418-18845428
Length = 745
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 362 TLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLF 472
T PE +H K + V G+SG+GK+TL+ +F
Sbjct: 28 TTPEDLHGKEHN---PVIISVFGKSGVGKTTLVRKIF 61
>05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 422 VVGESGLGKSTLINSLF-LGDLYKNRKIPDVQD 517
VVG +G GK+TL+++LF L D Y R + D D
Sbjct: 1265 VVGRTGSGKTTLLSTLFRLIDPYSGRILIDDLD 1297
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 404 FDFTLMVVGESGLGKSTLINSLF 472
F ++V+G+ G+GKS INS+F
Sbjct: 660 FSCNILVLGKIGVGKSATINSIF 682
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 347 YIGFATLPEQV--HRKSVKRGFDFTLMVVGESGLGKSTLIN 463
Y + PEQ+ S++ T+ +VGESG GKST+I+
Sbjct: 377 YFRYPARPEQLILDGLSLQVASGTTMAIVGESGSGKSTVIS 417
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 281 DGNKKSPITTVIKIQRDRGERDYIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLI 460
D + SP + K+ +RD I E+ RK + L ++G+ G+GK+TL
Sbjct: 245 DHRETSPCQSEPKVHGRDQQRDLIISKLTSEECARKKLS-----ILAIIGDGGIGKTTLA 299
Query: 461 NSLF 472
+F
Sbjct: 300 KLVF 303
>01_06_0371 +
28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 347 YIGFATLPEQV--HRKSVKRGFDFTLMVVGESGLGKSTLIN 463
Y + PEQ+ S+ T+ +VGESG GKST+I+
Sbjct: 382 YFSYPARPEQLIFDGFSLHVSSGTTMAIVGESGSGKSTVIS 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,124,920
Number of Sequences: 37544
Number of extensions: 346773
Number of successful extensions: 1347
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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