Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H03
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 137 1e-32
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 104 7e-23
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 104 7e-23
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 104 7e-23
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 33 0.24
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 1.3
Z83129-1|CAB63326.1| 84|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z49909-2|CAB60994.1| 375|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF058329-1|AAD20727.1| 375|Caenorhabditis elegans unknown protein. 29 5.3
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 7.0
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 7.0
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 28 7.0
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 137 bits (331), Expect = 1e-32
Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 2/183 (1%)
Frame = +2
Query: 269 LKTNDGNKKSPITTVIKIQRDRGERDYIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGK 448
+ + N S ++ + + +Y GFA P QV R++VK GFDFTLMVVG SGLGK
Sbjct: 1 MSSRTANSSSRNDESLRTGQHKENPNYWGFANFPNQVFRRAVKNGFDFTLMVVGRSGLGK 60
Query: 449 STLINSLFLGDLYK-NRKIPDVQDRXXXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAI 625
ST IN+LFL ++ N K V L LT+VDTPGFGDA+
Sbjct: 61 STFINTLFLAEINNLNEKESAPTHPHPSTVRVEEKLVKLVENSVSLNLTLVDTPGFGDAV 120
Query: 626 NCEDSWRVCSAYIDEQFRQYFTDESGLNR-RHMQDNRVHCCLYFVPPWAHSLRQVDLEMM 802
N W Y++ +F + F +E+ ++R + D VH CLYF+ P H L+ +D+E+M
Sbjct: 121 NNSKCWEPIVNYVESKFFEQFCEETRIDRGEKIVDKCVHLCLYFIEPSGHGLKPIDIELM 180
Query: 803 KRL 811
K L
Sbjct: 181 KHL 183
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 104 bits (250), Expect = 7e-23
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Frame = +2
Query: 347 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRKIP-DVQDRX 523
++GF +LP Q+ +K+V+ GF F LM VGE+G GK+TLI SLF N K+ + +
Sbjct: 79 HVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLF------NMKLDFEPCNHE 132
Query: 524 XXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAINCEDSWRVCSAYIDEQFRQYFTDESG 703
G++++L +V+T GFGD ++ + S +V Y++ QF Y +E
Sbjct: 133 LKTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEELK 192
Query: 704 LNR--RHMQDNRVHCCLYFVPPWAHSLRQVDLEMMKRLXR 817
R ++ D+R+H CLYF+ P H L+ +DL ++ L +
Sbjct: 193 PRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAK 232
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 104 bits (250), Expect = 7e-23
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Frame = +2
Query: 347 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRKIP-DVQDRX 523
++GF +LP Q+ +K+V+ GF F LM VGE+G GK+TLI SLF N K+ + +
Sbjct: 79 HVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLF------NMKLDFEPCNHE 132
Query: 524 XXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAINCEDSWRVCSAYIDEQFRQYFTDESG 703
G++++L +V+T GFGD ++ + S +V Y++ QF Y +E
Sbjct: 133 LKTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEELK 192
Query: 704 LNR--RHMQDNRVHCCLYFVPPWAHSLRQVDLEMMKRLXR 817
R ++ D+R+H CLYF+ P H L+ +DL ++ L +
Sbjct: 193 PRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAK 232
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 104 bits (250), Expect = 7e-23
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Frame = +2
Query: 347 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRKIP-DVQDRX 523
++GF +LP Q+ +K+V+ GF F LM VGE+G GK+TLI SLF N K+ + +
Sbjct: 148 HVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLF------NMKLDFEPCNHE 201
Query: 524 XXXXXXXXXXXXXXXRGVKLRLTIVDTPGFGDAINCEDSWRVCSAYIDEQFRQYFTDESG 703
G++++L +V+T GFGD ++ + S +V Y++ QF Y +E
Sbjct: 202 LKTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQEELK 261
Query: 704 LNR--RHMQDNRVHCCLYFVPPWAHSLRQVDLEMMKRLXR 817
R ++ D+R+H CLYF+ P H L+ +DL ++ L +
Sbjct: 262 PRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAK 301
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 410 FTLMVVGESGLGKSTLINSLFLGDLYKNRKIPDVQD 517
+ + VVG++G GKS+LI+ L + YKN ++QD
Sbjct: 238 YKIYVVGDTGTGKSSLISQLITSE-YKNAFADEIQD 272
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
Frame = +2
Query: 416 LMVVGESGLGKSTLINSLFLGDL---YKNRK 499
++++G+SG+GK++L+N +GDL Y NR+
Sbjct: 12 VIILGDSGVGKTSLMNQYEIGDLMNQYVNRR 42
>Z83129-1|CAB63326.1| 84|Caenorhabditis elegans Hypothetical
protein W06G6.2 protein.
Length = 84
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 678 LNCSSMYAEQTRHESSQLIASPKP 607
LN S Y + T HES +L ++P+P
Sbjct: 6 LNAESQYQDDTDHESRKLSSNPEP 29
>Z49909-2|CAB60994.1| 375|Caenorhabditis elegans Hypothetical
protein C14A4.2 protein.
Length = 375
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 179 NS*SV-PNFTMENSDSFAILGINLSDKDKDELKTNDGNKKSPITTVIKI 322
NS S+ NF +N + ILG L+++D + K+ K PIT +I++
Sbjct: 153 NSVSILQNFKQQNQHIWKILGELLTERDYEWSKSERTLKGKPITEIIEM 201
>AF058329-1|AAD20727.1| 375|Caenorhabditis elegans unknown protein.
Length = 375
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 179 NS*SV-PNFTMENSDSFAILGINLSDKDKDELKTNDGNKKSPITTVIKI 322
NS S+ NF +N + ILG L+++D + K+ K PIT +I++
Sbjct: 153 NSVSILQNFKQQNQHIWKILGELLTERDYEWSKSERTLKGKPITEIIEM 201
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLINSLF 472
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical
protein AC3.10 protein.
Length = 351
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 807 RFIISRSTCRRLCAQGGTK*RQQ*TRLSCICRLFRPLSSVKYCLNCSSMYAEQTRHESS 631
R+++ +ST +L AQ T + T + + +KYC C + ++ RH SS
Sbjct: 115 RYVVEKSTPEQL-AQQNTILEEMCTYCKVVVAECDQVGRLKYCYECGHIKPDRARHCSS 172
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLINSLF 472
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLINSLF 472
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 413 TLMVVGESGLGKSTLINSLF 472
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,381,865
Number of Sequences: 27780
Number of extensions: 344880
Number of successful extensions: 1037
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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