Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_H02
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    25   0.64 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 378 CPEAPQPREMI-DLEATFEKLENELREVNQNAEALKRNYLELTELK 512
           C EA   +++I  ++   +K E+E  EV  +A  L +N LE+T  K
Sbjct: 314 CQEANSTKKLIVKIKIDIDK-EDERNEVISSALKLSQNELEITACK 358


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +3

Query: 471 EALKRNYLELTELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALKLGFVAGV 650
           +AL R   +++  + + R  +V  D +A    +   + +LG    ++GG+  +L F A V
Sbjct: 176 QALLRMDRDISYSQRMARVEEVISD-LALSKCQNTPIGILGRIKGISGGEKKRLSFAAEV 234

Query: 651 ILRERI 668
           +   ++
Sbjct: 235 LTNPKL 240


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +3

Query: 471 EALKRNYLELTELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALKLGFVAGV 650
           +AL R   +++  + + R  +V  D +A    +   + +LG    ++GG+  +L F A V
Sbjct: 176 QALLRMDRDISYSQRMARVEEVISD-LALSKCQNTPIGILGRIKGISGGEKKRLSFAAEV 234

Query: 651 ILRERI 668
           +   ++
Sbjct: 235 LTNPKL 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,921
Number of Sequences: 336
Number of extensions: 2779
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)