Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_H02
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0) 100 3e-21
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 35 0.061
SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 34 0.14
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 31 1.3
SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011) 30 1.7
SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082) 30 1.7
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_30490| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_15616| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 29 3.0
SB_34214| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 29 3.0
SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5) 29 3.0
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 29 3.0
SB_21914| Best HMM Match : Exo_endo_phos (HMM E-Value=6e-05) 29 3.0
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 29 3.0
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_2239| Best HMM Match : WXG100 (HMM E-Value=2.8) 29 3.0
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 29 4.0
SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 29 4.0
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 29 5.3
SB_46766| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 29 5.3
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 29 5.3
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) 29 5.3
SB_35379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11) 29 5.3
SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24) 29 5.3
SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3) 28 7.0
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 7.0
SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5) 28 7.0
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 7.0
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 28 7.0
SB_9562| Best HMM Match : TetR_C (HMM E-Value=4) 28 7.0
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 28 9.2
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 28 9.2
SB_7222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 28 9.2
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_2824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
Length = 1128
Score = 99.5 bits (237), Expect = 3e-21
Identities = 54/116 (46%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Frame = +3
Query: 141 SEEMTLCQLFLQSEAAYACVSELGEL--GLVQFRDLNPDVNAFQRKFVNEVRRCDEMERK 314
++E+ + +FL+ ++ Y GE V + LNPDVNAFQRKFVNEVRRC+EMERK
Sbjct: 72 AKELLIGCMFLR-DSVYFSAEFYGEFEGSYVIRQSLNPDVNAFQRKFVNEVRRCEEMERK 130
Query: 315 LRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALK 482
LR+L+KEI + I M++ GE EAP PREMIDLEA + +++E + + ++
Sbjct: 131 LRFLQKEIEKAEIAMVD-TGESSEAPHPREMIDLEAEQHVHQQQIQEPGRTDDTVQ 185
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 35.1 bits (77), Expect = 0.061
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Frame = +3
Query: 201 SELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGEC 380
SEL + L + + L + F+++ E R+ +EM +L K + + E
Sbjct: 240 SELEKQKLHEGQKLEEARHEFEKQIQEEGRQLEEMRAELERQRKLHAMEAQNVEEARQRV 299
Query: 381 PEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELK----HILRKTQVFFDE 548
E + E+ DLE T + E + RE+ A+ +K ++L L+ ++ + Q D
Sbjct: 300 SELTRKHEIADLERTSREKELK-REIENRAQEIKEKAMQLETLREESEYVKQCAQKEVDT 358
Query: 549 MADPSREEEQVTLL 590
+ + R +++ LL
Sbjct: 359 LKETIRLQKEAQLL 372
>SB_8511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 315 LRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLEN-ELREVNQNAEALKRNY 491
L+Y + +R G+ +EI GE P A PR+++DL +E++ N +L N++ + +Y
Sbjct: 411 LKYKVQFYKRIGLQAIEIYGENPIARNPRKVVDL---YEEMTNLDLTPDNRSKSYIIMSY 467
Query: 492 LELTEL 509
L L ++
Sbjct: 468 LALGKI 473
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 33.9 bits (74), Expect = 0.14
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +3
Query: 282 EVRRCDEMERKLRYLEKEIRRDG--IPMLEIPGECPEAPQ-----PREMIDLEATFEKLE 440
+V C+E+ER L K++ + + L I + P A +E DL++ ++L+
Sbjct: 4237 KVNECEELERTTSDLSKKLSQAELIVQQLSIESDAPAAQTLVQQLQQEKDDLKSKLDQLK 4296
Query: 441 NELREVNQNA-EALKRNYLELTELKHILRKTQ 533
L++ NA EAL+R EL +L+ R Q
Sbjct: 4297 KTLQKSEANAEEALQRRTDELEKLQSQTRSLQ 4328
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +3
Query: 228 QFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGI-PMLE----IPGECPEAP 392
+ DL+ + + ++ ++ E++ + L+ EI D + P +E + P A
Sbjct: 493 ELEDLSTTIKRGRAEYERILKENAELKDENEALKAEI--DALKPKIEEEVVVQSAAPVAA 550
Query: 393 QPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELK 512
+ D E + LENELREV Q E +++ Y + E K
Sbjct: 551 GEPDFDDKEQ-LDMLENELREVKQKLEGVEKKYQQYREEK 589
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 264 QRKFVNEVRRCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
Q K + +C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 277 QEKMXAQREKCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 330
>SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)
Length = 501
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 288 RRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEAT-----FEKLENELR 452
RR ++E++L+ LE+E+ + + E E+ E I+ E T + LENEL
Sbjct: 191 RRQGKVEQRLKSLEQELEQSQAHYKALKKELEESNAKCEAIERELTNYRQQCKHLENELD 250
Query: 453 EVNQNAEALK 482
V E+LK
Sbjct: 251 RVKVKCESLK 260
>SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082)
Length = 319
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 354 PMLEIPGECPEAPQPREMIDLEAT--FEKLENELREVNQNAEALKRNYLELTELKHILRK 527
P + +P E RE + T F KLE+E+R+ +A+KR Y + L+ + K
Sbjct: 178 PGIVLPENDAETVAIREKVIAARTEIFNKLEDEIRKCWVFEDAIKRPYFHVKPLERVQLK 237
Query: 528 TQVFFDEMADPSREEEQVTLLGEEGLMA 611
+ + + E +V +L E ++A
Sbjct: 238 NWRDYLDYEIANGEHRRVVILFERCVIA 265
>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 95 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 154
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 155 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 196
>SB_30490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 95 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 154
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 155 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 196
>SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 95 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 154
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 155 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 196
>SB_15616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1
Query: 482 LKSFSVLVNLSQLILKLFEGRFKIDHLPGLRRLGTLSGDLQHGDPVTSDLLLQVTELTFH 303
LK F+ LS ++ +L+ K HLPGL + + + P + + ++ LTFH
Sbjct: 112 LKMFAF--ELSPIVAELYNTSLKEGHLPGLLKSANVRPLPKLSPPKSIETGIRPISLTFH 169
Query: 302 LIAA 291
L A
Sbjct: 170 LAKA 173
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 417 EATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQ 533
+ATFE+ + EL ++N+ E LKR +L ++ L+K Q
Sbjct: 102 KATFEQAQIELDQLNRTQEELKRGGEKLQDIVTKLQKEQ 140
>SB_34214| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 214
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 16 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 75
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 76 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 117
>SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5)
Length = 544
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 95 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 154
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 155 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 196
>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 711
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 95 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 154
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 155 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 196
>SB_21914| Best HMM Match : Exo_endo_phos (HMM E-Value=6e-05)
Length = 502
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1
Query: 482 LKSFSVLVNLSQLILKLFEGRFKIDHLPGLRRLGTLSGDLQHGDPVTSDLLLQVTELTFH 303
LK F+ LS ++ +L+ K HLPGL + + + P + + ++ LTFH
Sbjct: 355 LKMFAF--ELSPIVAELYNTSLKEGHLPGLLKSANVRPLPKLSPPKSIETGIRPISLTFH 412
Query: 302 LIAA 291
L A
Sbjct: 413 LAKA 416
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 29.5 bits (63), Expect = 3.0
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Frame = +3
Query: 282 EVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVN 461
E+++ DE KL+ +K++ + E+ E + ++ L T KLE+ L EVN
Sbjct: 972 ELQQQDEAIAKLQKAKKQVEDE---RTELEDHLQE--EQNKVSHLTKTKLKLESTLDEVN 1026
Query: 462 QNAEALKRNYLELTELKH----ILRKTQVFFDE-MADPSREEEQV 581
N E K+ E+ ++K L+ TQ +E A+ +R E++V
Sbjct: 1027 LNLEREKKVRGEVEKVKRKLEGDLKMTQQTLEETQAEKARTEDEV 1071
>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 590 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 649
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 650 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 691
>SB_2239| Best HMM Match : WXG100 (HMM E-Value=2.8)
Length = 139
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 16 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 75
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALK 629
E K+ ++ + + ++ +Q E L A + LK
Sbjct: 76 EWKNKCTDLELQKKTLLEELKQVQQTNCEEIEVLEALNEELK 117
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 29.1 bits (62), Expect = 4.0
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Frame = +3
Query: 225 VQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPRE 404
+Q D V A +++NE DE+ER LE ++R+ +LE E + RE
Sbjct: 370 IQAMDTERMVAASPGEYLNEAHSQDEIERLKLELE-VVQREKEQILE------EKDRIRE 422
Query: 405 MIDLE-ATFEKLENELREVNQNAEALKRNYLELTEL-KHILRKTQVFFDEMADPSREEEQ 578
++ E + L +R + + + L+ +L E+ K + K +++++ RE++
Sbjct: 423 IVKEENSMVSDLTENIRGLESSRQELEELVDKLLEVRKKLEEKVAELKEQLSNNQREKDN 482
Query: 579 VTLLGEE 599
+T EE
Sbjct: 483 LTYEKEE 489
>SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 420 ATFEKLENELREVNQNAEALKRNYLELTELKH 515
++F+ L + N NA++ K +Y +L ELKH
Sbjct: 179 SSFDALSTNSQNSNLNAQSGKESYTKLAELKH 210
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +3
Query: 399 REMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMADPSREEEQ 578
RE+ + E E L +E ++ EAL++++ E + K I K + + ++ S+ + +
Sbjct: 1432 RELKEKEIMIEALRSERATFGRDLEALRQSHTE-SYKKEIAHKEAMIQELYSEKSKLQGE 1490
Query: 579 VTLLGEEGLMAGGQALKLGFVAGVILRERIPAF 677
V + E +MA + + V GV + +R+ +
Sbjct: 1491 VESMRYELMMAKSDSER---VVGVEVEKRVEVY 1520
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.7 bits (61), Expect = 5.3
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Frame = +3
Query: 240 LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEI--RRDGIPML-EIPGECPEAPQPREM- 407
L V A K + V C++ +R+ + L+KEI +R+ + ++ E Q E
Sbjct: 400 LREQVAAMSNKIESLVEECEKHKRQTKLLQKEIDDQREAVAAKDQLEQEITSLKQQLEQQ 459
Query: 408 -IDLEATFEKLENELREVNQNAEA----LKRNYLELTELKHILRK 527
D ++T L++++ Q A ++R+Y+E TE H+LR+
Sbjct: 460 EADHQSTIRMLQDQILAKEQRLVAEIAEVERSYME-TE--HMLRE 501
>SB_46766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LE+ +RR+ +L + +C RE+ A F L EL +++ + + LEL
Sbjct: 95 LEENLRRETGKVLSLYKKCKGGRNRRELDKRYAEFSILSKELESISKLRDEYEDVNLELQ 154
Query: 504 ELKH 515
E K+
Sbjct: 155 EWKN 158
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEATFEKLENE 446
+C+ M+ L+YL I +DGI P + AP P+++ L T +E
Sbjct: 536 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRLTTSSSTSE 588
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = -1
Query: 341 SDLLLQVTELTFHLIAATYLIDELTLEGVYVRIQISEL 228
+DL LQVT+L+ + + + +L+L+ +R+Q+++L
Sbjct: 297 TDLSLQVTDLSLQVTDLSLQVTDLSLQVTDLRLQVTDL 334
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = -1
Query: 341 SDLLLQVTELTFHLIAATYLIDELTLEGVYVRIQISEL 228
+DL LQVT+L+ + + + +L+L+ +R+Q+++L
Sbjct: 402 TDLRLQVTDLSLQVTDLSLQVTDLSLQVTDLRLQVTDL 439
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = -1
Query: 341 SDLLLQVTELTFHLIAATYLIDELTLEGVYVRIQISEL 228
+DL LQVT+L+ + + + +L L+ +R+Q+++L
Sbjct: 304 TDLSLQVTDLSLQVTDLSLQVTDLRLQVTDLRLQVTDL 341
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = -1
Query: 341 SDLLLQVTELTFHLIAATYLIDELTLEGVYVRIQISEL 228
+DL LQVT+L+ + + + +L L+ +R+Q+++L
Sbjct: 409 TDLSLQVTDLSLQVTDLSLQVTDLRLQVTDLRLQVTDL 446
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEATFEKLENE 446
+C+ M+ L+YL I +DGI P + AP P+++ L T +E
Sbjct: 319 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRLTTSSSTSE 371
>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
Length = 498
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 426 FEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMADPSREEEQVTLLGEEGL 605
F KLE+E+R+ +A+KR Y + L+ + K + + + E +V +L E +
Sbjct: 151 FNKLEDEIRKCWVFEDAIKRPYFHVKPLERVQLKNWRDYLDYEIANGEHRRVVILFERCV 210
Query: 606 MA 611
+A
Sbjct: 211 IA 212
>SB_35379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 402 EMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMADPS 563
E + EA + + +VN + L R+Y + T +LR+ Q D+ DP+
Sbjct: 51 ECLTPEALVSYMNEIIDDVNNFFQDLPRSYADCTVKGSVLRQVQALADDGEDPN 104
>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
Length = 1011
Score = 28.7 bits (61), Expect = 5.3
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
Frame = +3
Query: 162 QLFLQSEAAYACVSELG--ELGLVQFRDLNPDVNAF--QRKFV-NE-VRRCDEMERKLRY 323
++ ++E A +S+L E L + +L D K V NE + +C+ +E KL
Sbjct: 184 EILWRAEKINALISDLQKKENSLEEMTELLKDTQTRLQSEKLVKNEYIIKCEILEGKLAM 243
Query: 324 LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELT 503
LEK+ RD E G RE+ L ++ ++ E + E L+ T
Sbjct: 244 LEKDDDRDSAQQEEKDGLL------REIEKLTMMLQEERDKSEESSALVEDLEEQLAAET 297
Query: 504 ELKHILRKTQVFFDEMADPSREEEQVTLLGEE 599
+ I+R + + +A RE +Q+ + E+
Sbjct: 298 QYSDIIRSKSI--ENIAMAERENKQLMTIVED 327
>SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)
Length = 614
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 258 AFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKL 437
+F+RK V + + + +L E+E+ +D E P +A P DLE L
Sbjct: 526 SFERKLVGMLEQLQKEGEELEKAEREMEKDA-EAAEAP---KQAESPENFPDLEEFLLNL 581
Query: 438 ENELRE 455
+ EL E
Sbjct: 582 DRELEE 587
>SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3)
Length = 327
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 50 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 94
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 463 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 507
>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 62 KCEFMQPSLKYLGHVIDKDGIHPASDKVEAIKTAPSPQDVTQLRA 106
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 608 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 652
>SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5)
Length = 296
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 29 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 73
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 642 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 686
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 685 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 729
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 415 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 459
>SB_9562| Best HMM Match : TetR_C (HMM E-Value=4)
Length = 242
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 80 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRA 124
>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 480 KRNYLELTELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQALKLG 635
+R L++T L +I K F + P + +TL G EGL G +A+ +G
Sbjct: 357 RRKSLQMT-LLYIKGKVGDFTVYLEQPIEKPRFITLRGYEGLRLGEKAISIG 407
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +3
Query: 303 MERKLRYLEKEIRRDGIPMLEIPGECPEAPQ-----PREMIDLEATFEKLENELREVNQN 467
M KL+YLEK + EI + A + +++ ++LE + + Q
Sbjct: 595 MREKLQYLEKSSEEADLQACEIENQLKHAKMVIQQLKDQELEMAKQIDELEQHIETLKQQ 654
Query: 468 AEALKRNYLELTELKHILRKTQV 536
+L+RN K L ++ V
Sbjct: 655 NNSLQRNNSSFEGEKRDLERSNV 677
>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQN 467
+CD ++KL+YL I +GI P E P PR + +L F + N R ++
Sbjct: 413 KCDFAKKKLQYLGHVITPEGISPSGSKVKAVSEYPPPRNLKELRC-FLGMINFYRRFIKD 471
Query: 468 AEALKRNYLELTE 506
A+ R +LT+
Sbjct: 472 FAAIARPLNDLTK 484
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 228 QFRDLNPDVNAFQRKFVNEVRRCD-EMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPRE 404
+ + L + N+ + ++V+++ R E+E + +I M E C E
Sbjct: 1061 KLKKLTSEKNSIKAEYVSKIARLQSELEESNQRSRLDIENVRTEM-EKQRLCEVEKVRNE 1119
Query: 405 MI-DLEATFEKLENELREVNQNAEALKRNY 491
M+ DLE T KL+ ++E ++ L +NY
Sbjct: 1120 MLSDLEETRAKLQRIVKECDERISILTQNY 1149
>SB_7222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 27.9 bits (59), Expect = 9.2
Identities = 8/31 (25%), Positives = 21/31 (67%)
Frame = +3
Query: 399 REMIDLEATFEKLENELREVNQNAEALKRNY 491
+E++DL+ T + L+ +++ +N ++R+Y
Sbjct: 238 QEILDLQTTVDTLQEQIKHLNDEKNDIRRSY 268
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 288 RRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENE 446
R+ E ER L K++ DG + + + E + REM+DL+ T E+L E
Sbjct: 856 RKTSEPERPTSQLNKQL--DGAKIEALQKQLSE--KNREMLDLQQTCERLRTE 904
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +3
Query: 441 NELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMADPSREEEQVTLLGEEGLMAGGQ 620
N+ + + + L++ + +K +KT V + +P R+EE +T +E + GQ
Sbjct: 1094 NQQQIQESSTQVLEKQQSQEQPVKQTQQKTDVQQATLQEPQRQEESLTKQVQETQQSQGQ 1153
Query: 621 ALK 629
+K
Sbjct: 1154 PVK 1156
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RCDEMERKLRYLEKEIRRDGI-PMLEIPGECPEAPQPREMIDLEA 422
+C+ M+ L+YL I +DGI P + AP P+++ L A
Sbjct: 326 KCEFMQPSLKYLGHVIDKDGIHPASDKLETIKTAPSPQDVTQLRA 370
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 27.9 bits (59), Expect = 9.2
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Frame = +3
Query: 249 DVNAFQRKFVNEVRRCDEMERKLRY-LEKEIRRDGIPMLEIPGECPEAPQPREMIDLEAT 425
D+ A Q + + E++R E R ++ +KE+ + + E RE+ DL+
Sbjct: 1215 DIRAQQLEEIEELKRQIEHMRDVQNNYQKELEAKDDSLHYLQDSKKE--MMRELEDLKEM 1272
Query: 426 FEKLENELREVNQNAEALK-RNYLELTELKHILRKTQVFFDEMADPSREE 572
K ENEL E + + NY + EL K + + + SREE
Sbjct: 1273 LHKKENELAEQAERIRVFESNNYGDAKELYETCNKLENEIGTLRE-SREE 1321
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 27.9 bits (59), Expect = 9.2
Identities = 27/119 (22%), Positives = 51/119 (42%)
Frame = +3
Query: 240 LNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLE 419
L DVN+ K N + +E++ + +KE + E + ++ D E
Sbjct: 292 LEQDVNSMSYKISNLETKVKNLEKEKAFYQKESEELEAKNRRMKNEILQL--QNQLKDKE 349
Query: 420 ATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMADPSREEEQVTLLGE 596
E L E +++ + ALKR+ L + ++L K Q+ + A+ +E LL +
Sbjct: 350 RMCENLAAEAKQLEASNNALKRDKKALEDEINLL-KMQLESSKHANEVSQERIRELLAQ 407
>SB_2824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 429 EKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEMAD---PSREEEQVTLLGEE 599
E LE +EV++ A R Y ELTEL + + V F + D P V+L G E
Sbjct: 17 EMLETASKEVDRQLSA-DRQYPELTELLGVTSQNSVSFSGVNDYDYPCLSSPSVSLSGME 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,222,149
Number of Sequences: 59808
Number of extensions: 392279
Number of successful extensions: 1505
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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