Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G21
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    30   0.49 
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    28   2.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    27   3.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   4.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.0  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   8.0  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 370 EEILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRP-PRVEIVPASE 546
           +EI    D   V    L     KSE  L  ++  +P+D +S + L T+  P  E + AS 
Sbjct: 349 DEIFACED--DVHYTALPKQNPKSERILEPIIA-SPKDNTSDKGLLTKSAPTFEELQAS- 404

Query: 547 VTPQPIKTS 573
           +TP+P+KTS
Sbjct: 405 ITPKPVKTS 413


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 140 WISRKQ*NKYKIFCSHILNSLDLPAKR 220
           W+  ++  K   FC H +  LD+P KR
Sbjct: 100 WLGEEKYQKLVNFCLHYIADLDIPVKR 126


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
 Frame = +1

Query: 142 DIEKTVKQVQNILQSHSELPRLTREEIIQ-LMNDIKAEDXXXXXXXXXXXXXNEIKITTP 318
           +I +    ++ IL+S +  P L R EI +   NDIK  D             ++ ++   
Sbjct: 413 EIIQPESDIRYILESAATGPFLPRVEIYEDYYNDIK--DQIFGVDVEFLSHRDKKRVPII 470

Query: 319 YSTSDNEIYSVTQTLKNEE----ILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDG 486
            ST  + +  +  TL ++E    I L+N   S      EA    S  +  V+  YTP   
Sbjct: 471 VSTILSYLDLLYPTLASDEVRQNIWLVNSPLSSVHQLREALNHSSSVTKEVLSQYTPSVV 530

Query: 487 SSLQELYTRPPRVEIVPAS 543
             + +LY       IVP+S
Sbjct: 531 IGVLKLYFLELPDSIVPSS 549


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 157 VKQVQNILQSHSELPR---LTREEIIQLMNDIKAE 252
           +  +QN L+S  E+     +T+E ++QL ND++ E
Sbjct: 845 INNLQNQLESTKEVANELTITKERVLQLTNDLQEE 879


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 415  CLAELKPHHLSVKFPHFLTSALLNIFH 335
            CL     H  S++  H + + LLNI+H
Sbjct: 3298 CLLSFSQHAASLRICHGIDAMLLNIYH 3324


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 118 MTVAESAVDIEKTVKQVQ-NILQSHSELPRLTREEIIQLMNDIKAED 255
           M+V   A  +E+T   ++ ++    S L  +TR   +   ND+K ED
Sbjct: 1   MSVQYDAFSVEQTCADLETDMYNGLSSLQEITRRNKVHGDNDLKVED 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,365
Number of Sequences: 5004
Number of extensions: 66044
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)