Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G20
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    70   3e-13
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    30   0.42 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   6.8  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   9.0  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.0  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
 Frame = +3

Query: 192 YTFFGIRYAEPPLGPRRFQRPVRQYLASELNATRQCLP--CPQRDPYYPDR--------F 341
           + F GIRYA+PP+G  R++RPV      + +         CPQ  P+Y +R        F
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ--PFYNNRKNQVRNPDF 76

Query: 342 IGHEDCLCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAY---GGQHLTQKDT----I 500
              EDCL LN++ P       G PV++F+HGG  + G+   Y     Q L    +    I
Sbjct: 77  KYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFI 136

Query: 501 LVTAQYRLGSLGYLS----TDERDAAGNVGLFDLHAVMAWIQDYITFFGGD 641
           LV+  +RL   G+L+     +E   + N G +D    + W   +I  FGG+
Sbjct: 137 LVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGN 187


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 416 YWATSFIARHFGSEYIETQTIFVTNKSVGIVRVSLRTR*ALSRGVQLTC*IL 261
           YW T F+    G ++I+ Q +F+T     I+  S  T   +S G +  C ++
Sbjct: 396 YWFTVFLVEKLGRKWIQLQGLFITGLMFAILAGSWDT---ISTGGRFACFVI 444


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 372 VFAPKMPGDERGCPVVFFVHGGNYKSG---SASAYGGQHLTQKDTILVTAQYRL 524
           +F P     E G P   + HGG +  G   + +++      Q   ++V   YRL
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL 141


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 650  SCCNGPRFGWERCITFXNVSGRTYR 724
            +C N PRF +E C T  N S +  R
Sbjct: 1482 TCNNDPRFAYEICKTLDNDSDKFVR 1506


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = -1

Query: 659 YNNSSWITTKKRYIVLNPGHYSM 591
           +N + WI++++R+ +++PG  S+
Sbjct: 56  FNGTEWISSRERFSLVSPGWASI 78


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 392 RHFGSEYIETQTIFVTNKSV 333
           RHFG++Y++  T + TNK V
Sbjct: 442 RHFGAQYVDCDTDY-TNKGV 460


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 720 YVLPLTLXKVMQRSHPNLGPLQQLELDHHQKTLYSLESR 604
           Y++P  L   ++R HPNL    QL +  H  +L ++++R
Sbjct: 67  YLMPSPLTDDLKRRHPNL----QLSVVSHISSLLNIKNR 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,972
Number of Sequences: 5004
Number of extensions: 63817
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)