Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_G19
(874 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 53 3e-07
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32) 41 0.002
SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16) 35 0.100
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 34 0.17
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 34 0.17
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 33 0.30
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_55962| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 31 0.93
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13) 31 1.2
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 30 2.1
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 30 2.1
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40) 30 2.8
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029) 29 3.8
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 29 3.8
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 29 5.0
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 29 5.0
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 29 5.0
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 6.6
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21) 29 6.6
SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15) 29 6.6
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54) 29 6.6
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15) 29 6.6
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 28 8.7
SB_49916| Best HMM Match : ig (HMM E-Value=8.5e-06) 28 8.7
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 28 8.7
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 8.7
SB_29629| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 28 8.7
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43) 28 8.7
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 53.2 bits (122), Expect = 3e-07
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +3
Query: 294 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPN----TNRIVTCSVDRNAYVWTQG-DDGKWA 458
++++ G W + L H V + WAPN T+ I +CS D +W++ ++G+
Sbjct: 20 MFRETGGQWVEEQKLEAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIWSRNEEEGEGW 79
Query: 459 TTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNW 590
++ VL + N V WS N AV G +S+ E W
Sbjct: 80 SSKVLKKFNDVVWHVSWSVTGNILAVSGGDNKVSLWKESLEGQW 123
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 43.6 bits (98), Expect = 2e-04
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Frame = +3
Query: 252 RSQIAFSPNNNEVHIYK----KEGNDWKQTNNL---VEHDLRVMGIDWAPNTNRIVTCSV 410
R+ I N N + ++K K+G T V H ++ I A N I++CS
Sbjct: 160 RAFITALANGNTIRVFKVSKKKDGTGTTITGEFDFPVRHKAEIINIAVASNGKYIMSCSK 219
Query: 411 DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSG----ARLISICYFEK 578
D +W G+ TL L+IN + + + SP +F +G +L + + +
Sbjct: 220 DTTIIIWDL--KGEVLATLDTLQINNSFSAL--SPC-GRFVASAGFTPDVKLWEVKFNKS 274
Query: 579 ENNWWVSKHIKK----PIRSTVTSIDWHPNN-ILLVAGSADFKVRVF--SAYIK-DIEDQ 734
+ VSK ++ T+T+I WHP++ L AG +D ++RV+ +A IK I+D
Sbjct: 275 DAFEQVSKCFQEDHSVSQSDTITAIAWHPSSRYLASAGGSDRQIRVWHNAAGIKVQIDDL 334
Query: 735 PG 740
G
Sbjct: 335 KG 336
>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
Length = 458
Score = 40.7 bits (91), Expect = 0.002
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3
Query: 483 NRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN- 659
N V WS + A GS R S+ +K+ HI K +V + WHP+N
Sbjct: 33 NSKVHSVSWSCDGRRLASGSFDRTASVFVLDKDR--LTLDHIYKGHNESVDQLCWHPSNP 90
Query: 660 ILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQ 776
L V S D +R++ A I ++P P W S P +
Sbjct: 91 DLFVTASGDKTIRIWDARIL---ERPPPR-WSSNSPYSE 125
>SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16)
Length = 91
Score = 34.7 bits (76), Expect = 0.100
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 342 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 464
+H + + + + R+ TCS D++ VW G+DG+W T
Sbjct: 10 DHKDLIHDVSYDFHGRRMATCSSDQSVKVWDLGEDGEWRCT 50
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 306 EGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 437
E +W+ T N H V + WA P +++ +CS DR VW +
Sbjct: 43 EDGEWRCTANWKTHSGSVWKVTWAHPEFGQVLASCSFDRTVAVWEE 88
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 501 VKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGS 680
+ +SP +NK+A + L+ I F + + + + + V IDWHP+ LLV+GS
Sbjct: 119 LSFSPTDNKYASCADDGLVKIWDFYR----CMEEKTLRGHGADVKCIDWHPHKSLLVSGS 174
Query: 681 AD 686
D
Sbjct: 175 KD 176
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +3
Query: 276 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 455
+ N + +Y ++ NL H+ +V + W+ + ++I++C +D Y W + +
Sbjct: 252 HGNVIQLYSS--TTFENVGNLKGHNGKVRQVIWSQDDSKIISCGMDGAVYEWNVYNYKRE 309
Query: 456 ATTLVLLRINRAATCVKWSP-MENKFAVGSGARLISIC 566
+++ + + T V SP FAVGS + IC
Sbjct: 310 GESVLK---SCSYTSVTVSPDGRTTFAVGSDRTIKEIC 344
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 33.1 bits (72), Expect = 0.30
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Frame = +3
Query: 330 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 509
N+L HD V GI + R+V+ S DR +W +A L + CV
Sbjct: 826 NSLDGHDGHVRGIAITSDGRRLVSASQDRTLRIWNL---ETFAHVSTLRGHSETVYCVCC 882
Query: 510 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPI--RSTVTSIDWHPNNILLVAGSA 683
SP ++KFA+ SG+ + ++ E+ +K ++ + S + ++ P+ +++
Sbjct: 883 SP-DDKFAI-SGSEDTMVKIWDLES----AKEVRSLVGHTSDIFAVAVTPDGSKVISSGD 936
Query: 684 DFKVRVFS 707
D +V+V+S
Sbjct: 937 DTQVKVWS 944
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 33.1 bits (72), Expect = 0.30
Identities = 31/165 (18%), Positives = 66/165 (40%)
Frame = +3
Query: 216 CAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 395
C + C ++ D S++ +N V ++ + +Q ++ H V ++ + +RI
Sbjct: 510 CGAVYCCKFSSDSSKVVSCGTDNHVKVWDSQSG--RQLLSISGHGDVVNCCAFSHDDSRI 567
Query: 396 VTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFE 575
++CS D+ +W D L + + +SP + K S R + +
Sbjct: 568 ISCSADQTVKIW---DASSGEGVLCFVGHTQEVFSCSFSPDDTKAVSCSADRTVKVW--- 621
Query: 576 KENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSA 710
++ V H+ V + P+ + + S D VR++ A
Sbjct: 622 -DSKTGVCYHVYMAHTDIVRWCCFSPDGGKVASCSDDNTVRIWEA 665
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 31.9 bits (69), Expect = 0.70
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Frame = +3
Query: 345 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 524
HD+ +++P+ I++ S+D A VW + D + TT L+ ATC +S E
Sbjct: 1633 HDMFCQYTEFSPSGEFIISSSIDNTAQVW-RFDTHRHVTT---LQHPDWATCAVFSHDER 1688
Query: 525 KFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 704
A S + + + E + + S + + + P++ LL + + D +RV+
Sbjct: 1689 HIATCSRDQKVRLWAVE----GYAQVAAMEGHESEIRVVSFSPDDSLLASAALDQTIRVW 1744
Query: 705 --SAYIKDIEDQPGPNVW 752
S+Y + VW
Sbjct: 1745 DLSSYTQHHVFYTASGVW 1762
>SB_55962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 31.5 bits (68), Expect = 0.93
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +3
Query: 495 TCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVA 674
T SP +GS RL + + W SK + P T+TS+ W + LVA
Sbjct: 160 TVAACSPSGQSVVIGSFDRLRVFNWSPRRGAWDESKAKEIPNLYTITSLAWKRDGSRLVA 219
Query: 675 GSADFKVRVFSAYIK 719
G+ V +F ++
Sbjct: 220 GTLCGGVELFDCCLR 234
>SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +3
Query: 222 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQ----TNNLVEH-DLRVMGID 371
P H WN + F N +E Y+++G WK+ T +H L+V GID
Sbjct: 1094 PPPLHLWNTPPNGSMFLINRHEFRDYRRDGYTWKKRTKSTTTREDHFKLKVQGID 1148
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 31.5 bits (68), Expect = 0.93
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 7/158 (4%)
Frame = +3
Query: 252 RSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 431
R + F+PN ++ ++ LV H V + + +++CS D+ +W
Sbjct: 51 RKKFEFNPNAPPLNRIPFPEMTASESRRLVGHSGPVFAVSIDHDNKFLLSCSEDKTIRLW 110
Query: 432 TQGDDGKWATTLVLLR-INRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHI 608
+ TTLV R N V++ P + FA S R + W + H
Sbjct: 111 SLFT----FTTLVAYRGHNYPVWDVQFCPRGHYFASTSHDRTARL---------WSTDH- 156
Query: 609 KKPIR------STVTSIDWHPNNILLVAGSADFKVRVF 704
++P+R S V + +HPN + GS+D VR++
Sbjct: 157 QQPLRIFAGHVSDVNKVAFHPNCNYIATGSSDRTVRLW 194
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +3
Query: 318 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA-A 494
W+ + L +H V+ + W+P+ + + + SVD +W + K+ + +++ +
Sbjct: 78 WRCVHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIW---NAQKFPEVIQIIKGHTGLV 134
Query: 495 TCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPI-----RSTVTSIDWHPNN 659
V W P+ A S + + + + +W + +P + V + W P+
Sbjct: 135 KGVTWDPVGKYLASQSDDKTLRVW---RTTDWQQETSVTEPFLECSGTTHVLRLSWSPDG 191
Query: 660 ILLVAGSA 683
+V+ A
Sbjct: 192 HYVVSAHA 199
>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
Length = 232
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/89 (24%), Positives = 34/89 (38%)
Frame = +3
Query: 246 KDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAY 425
K +A N+N++ +Y E D + H ++ +D + +IVT S D
Sbjct: 145 KTNDHLAVVTNSNQLRLYNLETLDCRMVEG---HSKMILCLDVCADGTKIVTGSKDHTVR 201
Query: 426 VWTQGDDGKWATTLVLLRINRAATCVKWS 512
VW D V A + V WS
Sbjct: 202 VWDVSDCSNPRCLAVGNGHTHAVSGVAWS 230
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 30.3 bits (65), Expect = 2.1
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Frame = +3
Query: 345 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 521
H V +DW P TN + +CS+D + VW +G + A VKWSP
Sbjct: 203 HTSGVNRLDWNPVYTNLLASCSMDNSVRVWDTYLNGICVKSHTF--HGGAVKDVKWSP-- 258
Query: 522 NKFAVGSGARLISICYFEKENNWWVSKHIKKPI-----RSTVTSIDWHP--NNILLVAGS 680
G +L+S C ++K + + H + VT + +HP N+ L G+
Sbjct: 259 ------GGMQLLS-CGYDKSSR-LIDIHTGCQVSLFHQNDYVTCVQYHPIDRNVFLTGGA 310
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 345 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 524
H V + W+P ++++C D+++ + D + L N TCV++ P++
Sbjct: 247 HGGAVKDVKWSPGGMQLLSCGYDKSSRLI----DIHTGCQVSLFHQNDYVTCVQYHPIDR 302
Query: 525 KFAVGSGAR 551
+ GAR
Sbjct: 303 NVFLTGGAR 311
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 30.3 bits (65), Expect = 2.1
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 2/173 (1%)
Frame = +3
Query: 198 LTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA 377
LT A + AWN D + S + + + + + + + LV H V G+ W+
Sbjct: 99 LTMDGHSARVGALAWNGD---MLSSGSRDRLILQRDTRSPTQLERRLVGHRQEVCGLKWS 155
Query: 378 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPME-NKFAVGSGAR 551
P+ + + D VW +T + + AA + WSP + A +
Sbjct: 156 PDHQHLASGGNDNKLLVWNLSG----STPIQQYSEHTAAVKAISWSPHQVCNLAWSKHSN 211
Query: 552 LISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSA 710
+ + +N V K+ P + V + H +L +A S D + V A
Sbjct: 212 ELVSTHGYSQNQILVWKY---PSLTQVAKLTGHSFRVLYLAVSPDGEAIVTGA 261
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 249 DRSQIAFSPNNNEVHIYKKEGNDWKQTN--NLVEHDLRVMGIDWAPNTNRIVTCSVDRNA 422
D +I +N V I+ + G+ N +L EHD V + +RI++ S DR+
Sbjct: 52 DSKRIVVGSDNGAVDIWSQSGSLLGLENLASLKEHDNVVSSVSVDCEKSRIISASWDRSI 111
Query: 423 YVW 431
VW
Sbjct: 112 KVW 114
>SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40)
Length = 400
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = +3
Query: 345 HDLRVMGIDWAPN-TNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 521
H + + W P+ + +T SVDR VW + + T I K++
Sbjct: 98 HRSSIETVQWYPHDSGMFLTSSVDRTLKVWDT-NALQVVETFNFEGIVYKHQAAKYAKRH 156
Query: 522 NKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHP-NNILLVAGSADFKV 695
+ A + + +C + + HI + + V S+ W P N LL G D KV
Sbjct: 157 SLVATANEDSRVYLCDLRTGS----ASHILRGHATAVLSVSWSPLNQYLLATGGRDNKV 211
>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
Length = 498
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 521 LHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSI 417
LHG H + V T SCPF I+ ++P++ +
Sbjct: 297 LHGDMSHTQKQGVYTAIRDPSCPFKILYVTPEILV 331
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 333 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 431
+L H L VM +D + ++ IVT S D+N +W
Sbjct: 241 SLYGHKLPVMAMDISSDSTLIVTGSADKNIKIW 273
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 29.5 bits (63), Expect = 3.8
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Frame = +3
Query: 345 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINR-AATCVKWSPME 521
HD RV W+PN + + S D +W + + T L +R + A T V++ P
Sbjct: 87 HDDRVKSCAWSPNGEYVASSSADGRVTLW----EPRLGTALSKIRAHEDAVTHVEFYPFV 142
Query: 522 NKFAV----GSGARLISICY-FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSAD 686
+ +V SG R + + F K K K SI P+ LL G +D
Sbjct: 143 STNSVPVLFTSGGRACRVWHPFRKRKQLESIKPHKAGDEVEAFSIS--PDGTLLATGGSD 200
Query: 687 FKVRVFSA 710
+ V SA
Sbjct: 201 RNI-VLSA 207
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +3
Query: 306 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 446
+ N W H + +DW N N +CS D+ +V G D
Sbjct: 215 DANTWDVKQQFAFHQAPTLDVDW-QNNNSFASCSTDKLIHVCRLGLD 260
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 619 FVRL*HLLIGIPITFCSSLALLTSKYESSLPISRISKISLDRM 747
FVR L + T C+ + + +S+++SS+P R + +S RM
Sbjct: 379 FVRKYPKLSAVDATNCAGVRVFSSEFDSSMPYGRKASLSDTRM 421
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 273 PNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 431
P ++E+ KKE N KQ H RV+G++ + + +VT S D + VW
Sbjct: 827 PPDDEMTEKKKEPKNVIKQVVCWRAHLTRVVGVEHVDSADAVVTASTDLSVRVW 880
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 29.1 bits (62), Expect = 5.0
Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 11/152 (7%)
Frame = +3
Query: 282 NEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKW 455
N ++ ++ D+ + + +H +AP+ N I + + N +W TQ D
Sbjct: 36 NNKSVFIRDVEDFAKCDVYTDHAKDTTVAAYAPSGNYICSGDITGNVRIWDTTQKDH--- 92
Query: 456 ATTLVLLRINRAATCVKWSPMENKFAV-GSGARL-ISICYFEKENNW-------WVSKHI 608
I A + WSP + V G G IC ++ + KH+
Sbjct: 93 LLKYEYPCIGGAIKDIAWSPDSKRIVVVGEGRESPFRICTGSEDRTVGFHEGPPFKFKHL 152
Query: 609 KKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 704
+ V I + P+ +AGSAD K+ ++
Sbjct: 153 NSEPTNFVNCIGYSPSGDFFIAGSADGKLCLY 184
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 630 VTSIDWHP-NNILLVAGSADFKVRVFSAYIKDIEDQPGP 743
+TS++WHP + + A SAD ++ ++ ++ E GP
Sbjct: 278 ITSVEWHPTDGSVFAASSADNQITLWDLAVERDEAAEGP 316
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 339 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 443
V+ ++ +M I W+ +T+RI+T + +W+ G+
Sbjct: 545 VKGNVAIMSIQWSKDTSRILTLNSQGTVELWSVGN 579
>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
Length = 447
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 306 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 446
+ N WKQ +L H L V I ++ + RI++ S DR+ V+ D
Sbjct: 235 DANIWKQVCSLPGHSLTVTQIAFSHSGQRILSVSRDRSWAVFRLRQD 281
>SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15)
Length = 481
Score = 28.7 bits (61), Expect = 6.6
Identities = 30/125 (24%), Positives = 49/125 (39%)
Frame = +3
Query: 345 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 524
H+ V+ IDW P N I++ D VW D T V W+P
Sbjct: 50 HEGIVLKIDWNPINNLILSGGEDCKYKVW----DSYGRVLYSSAPHEYPITSVSWAPDGE 105
Query: 525 KFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 704
VGS + +C + W S ++KP ++ +I W + L + +V +F
Sbjct: 106 LLGVGS-FNTLRLC----DRTGW-SYALEKPNTGSIFNIAWSNDGTQLAGACGNGQV-IF 158
Query: 705 SAYIK 719
+ I+
Sbjct: 159 AHVIE 163
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 276 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 395
+NNEV + K D +NN VE+D + ID + N +
Sbjct: 1609 SNNEVELAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1648
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 342 EHDLRVMGIDWAPNT--NRIVTCSVDRNAYVWTQGDDG 449
EHD V + W+ N + +CS DR +W + G
Sbjct: 3103 EHDGPVWQVSWSHPMFGNLLASCSYDRKVIIWKESSSG 3140
>SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)
Length = 275
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 467 CSSAYQPSSDLREMVSHGEQVCCRVRS 547
C + YQP S L E +SHG + RV S
Sbjct: 93 CQAGYQPVSRLCEGLSHGSRYVLRVSS 119
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 291 HIYKKEGND---WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 431
HI E ++ W + L H V + W+P+ ++++ SVD +A +W
Sbjct: 158 HILDDENDNLETWTVSKMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIW 207
>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
Length = 490
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 237 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVD 413
A + D + + ++N +I+K D + L H V + W P + ++VTCS D
Sbjct: 82 ALSPDDNYLLSGSSDNNAYIWKVSDAD-RPPVCLRGHAGEVTSVVWCPQDITKVVTCSDD 140
Query: 414 RNAYVW 431
+W
Sbjct: 141 TTVRIW 146
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 28.3 bits (60), Expect = 8.7
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 249 DRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 428
D + I +++ V ++ D N L+ H V+ + + +VTCS DR+ V
Sbjct: 239 DENVIVTGSSDSTVRVWNVHAGD--MLNTLIHHCEAVLHLRF--QEGMMVTCSKDRSIAV 294
Query: 429 WTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAV-GSGARLISI 563
W + VL+ +RAA V ++K+ V SG R I +
Sbjct: 295 WDMQSPTDISLRRVLVG-HRAA--VNVVDFDDKYIVSASGDRTIKV 337
>SB_49916| Best HMM Match : ig (HMM E-Value=8.5e-06)
Length = 465
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +3
Query: 210 DSC-APITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRV---MGIDWA 377
D C A ++ +A + + A +P HIY+ + WK T+ V + + ID
Sbjct: 284 DECEALVSSNATREHAHEAAETPTLLPSHIYETTNDTWKTTSTSVNSETAIGLYSAIDNG 343
Query: 378 PNTNRIVTCSVDRNAYVWTQGD 443
N + S D N + T D
Sbjct: 344 MNDDVNPYASADHNPEITTSKD 365
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 621 RSTVTSIDWHPNN-ILLVAGSADFKVRVFS 707
R T+T+I W+P+N +L + AD +V ++S
Sbjct: 61 RKTITAIAWNPHNEDILASAGADCRVLIWS 90
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 446 IISLSPDVSITVNRTRNNTV 387
I ++SPDVS+T+NRT + T+
Sbjct: 671 ITAISPDVSVTINRTDSVTL 690
>SB_29629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 261 IAFSPNNNEVHIYKKEGNDWK 323
I F PN + H Y+K+G WK
Sbjct: 184 IRFDPNPSIAHRYRKQGRPWK 204
>SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 507
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -3
Query: 509 PFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVV 330
P + S+ ++ + ++C F + L+ + +RT + + G PINPH ++ +V
Sbjct: 428 PPYISQSTLLGRNGSNACTFISLILAHSYITSASRT-SIQLSRGPPINPHWLSMMLSAIV 486
Query: 329 C 327
C
Sbjct: 487 C 487
>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
Length = 607
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 234 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEH 347
H +N + + ++ N+N+ HIY GND +N +H
Sbjct: 178 HIYNDNSNDHIYNDNSND-HIYNDNGNDHIYNDNSNDH 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,881,642
Number of Sequences: 59808
Number of extensions: 609814
Number of successful extensions: 1935
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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