Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_G14
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.068
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 34 0.16
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 31 1.5
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 31 1.5
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708... 30 1.9
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 30 2.6
01_05_0663 - 24119355-24120101 28 7.8
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 35.1 bits (77), Expect = 0.068
Identities = 24/100 (24%), Positives = 47/100 (47%)
Frame = +2
Query: 251 PVKAETFSVIAAKSSIGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTAEAP 430
PV+A V+ + ++ V++++ L GL A + + K+ A C+ AE
Sbjct: 6 PVEAPPAPVLGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHA--AQLCVLAE-- 61
Query: 431 PGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYC 550
D +++ L++A C E+++H++ V L G C
Sbjct: 62 DCDQPDYVK--LVKALCAEHNVHLVTVPSAKTLGEWAGLC 99
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/100 (23%), Positives = 46/100 (46%)
Frame = +2
Query: 251 PVKAETFSVIAAKSSIGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTAEAP 430
PV+ V+ + ++ V++++ L GL A + + K+ A C+ AE
Sbjct: 6 PVETPAAPVLGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHA--AQLCVLAE-- 61
Query: 431 PGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYC 550
D +++ L++A C E+++H++ V L G C
Sbjct: 62 DCDQPDYVK--LVKALCAEHNVHLVTVPSAKTLGEWAGLC 99
>06_02_0068 + 11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 30.7 bits (66), Expect = 1.5
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 217 SSIQNVQGSSCSSKSRDLQCYSS*KLYRTMYQDSVKASLCRKKVNNWLTSRHSILIEELQ 396
SS+QN SSK R QC ++ + ++ D V +L + NNW LI +LQ
Sbjct: 1304 SSLQNALEEFLSSKERSRQCVAAEAMAGMLHSD-VTGNL--ESGNNW-------LILQLQ 1353
Query: 397 WCIVLPDRRS-PAWR*CNAYA 456
++ P S P W C YA
Sbjct: 1354 KIMLSPSVESVPEWAACIRYA 1374
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 431 PGDSATHMQDVLLQAFC-VENDIHVIKVDCETKLRRMLGYC 550
P +SA H+ DVL C ++D V V C + M GYC
Sbjct: 523 PWESACHVPDVLPTHRCRTDDDCGVEAVSCRRRTCSMAGYC 563
>01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,
7080866-7083890,7084253-7084596
Length = 1251
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +2
Query: 449 HMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYCSPMDFSCVLVHY 586
H+++V +++F E V+++ L ++L CS M+F +++HY
Sbjct: 999 HLEEVAIRSFDAE--CRVLRMARHRNLIKVLNTCSNMEFRALVLHY 1042
>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
Length = 634
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 143 HSVKIHIRISLRSLEISEIQELRSIRLS 226
HS+ +H R S SL++ +QE+ R+S
Sbjct: 3 HSINVHPRASFSSLDVEGVQEVEHTRMS 30
>01_05_0663 - 24119355-24120101
Length = 248
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 497 EYHFQRKMLAGGHLAYALHYRQAGLRRSG 411
+Y Q + L + A +LH RQA LRR G
Sbjct: 204 DYREQVRRLEASNYALSLHLRQADLRRGG 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,868
Number of Sequences: 37544
Number of extensions: 452497
Number of successful extensions: 1089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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