Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G14
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   7.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 170 KSECEFSQNALTLYIKSFYYVNTLKLLAVI*TCDTIIS 57
           K + ++SQ+ L +    F  VN  KL      CDT+I+
Sbjct: 436 KLQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLIN 473


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 170 KSECEFSQNALTLYIKSFYYVNTLKLLAVI*TCDTIIS 57
           K + ++SQ+ L +    F  VN  KL      CDT+I+
Sbjct: 436 KLQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLIN 473


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 660 STTANQTGAIHKCPSSS 710
           ST   +TG I KC  SS
Sbjct: 242 STRTAETGTIRKCDESS 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,093
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)