Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_G13
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118... 70 1e-18
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 33 0.25
07_03_1406 + 26343915-26346032 31 1.0
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 31 1.0
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 30 1.8
03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763... 29 4.1
09_04_0619 - 19001350-19001359,19001737-19001800,19001955-190020... 29 5.4
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753... 29 5.4
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961... 28 7.2
01_07_0135 + 41342118-41342181,41342326-41343260 28 7.2
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 28 9.5
>01_07_0174 -
41711220-41711408,41711483-41711669,41711690-41711810,
41712194-41712266,41712494-41712585,41712900-41712948,
41713189-41713413
Length = 311
Score = 70.1 bits (164), Expect(2) = 1e-18
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 2/177 (1%)
Frame = +3
Query: 126 FKIGFVGGGNMSTAIVQGILKNDAYPASNIWVSGPHL--ENLQKWSLLNTNVSIKNSDVV 299
F++GF+G GN++ +I +G+ + PA+ I + PH E + +S + ++ N+ VV
Sbjct: 19 FRLGFIGPGNLAESIARGVAASGVLPATAI-RTAPHRRPERAEAFSSIGAHILETNAQVV 77
Query: 300 NNCEIIFLGIKPNKLETAVQQCLNGIESLSKKKSILFVSMLAGRKINDLQEVLSVLSPYA 479
++ ++I + +KP V+Q L ++ L ++ +L VS+ AG K+ DLQ
Sbjct: 78 DDSDVIVISVKPQ----IVRQVLVELKPLLSEEKLL-VSIAAGIKMEDLQ------GWSG 126
Query: 480 DIRIIRIMPNTPMAVGAGICLYTPDNNVSQDQCKFLEDLLSSTALCERVEEPTMDTL 650
R IR+MPNTP AVG + +++ + L S+ EE D +
Sbjct: 127 HRRFIRVMPNTPSAVGQAASVMCLGEMATENDENRVRSLFSAIGKVWTAEEKYFDAV 183
Score = 40.7 bits (91), Expect(2) = 1e-18
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 669 GPAFIYIVIEALXDGAVKQGVPRAMALRHAXQVV 770
GPA+I++ IEA+ DG V G+PR +AL A Q V
Sbjct: 217 GPAYIFLAIEAMADGGVAAGLPRDLALGLASQTV 250
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +3
Query: 231 HLENLQKWSLLNTNVSIKNSDVVNNCEIIFLGIKPNKLETAVQQCLNGIESLSKKKSILF 410
H+E L++W L NV++ + ++ + ++ + P K E ++ NGI L +KK +
Sbjct: 445 HMEVLRRWMDLQRNVNV----LYDSSKGLYAFMHPLK-EAKNEKNANGIRQLLEKKEGIL 499
Query: 411 VSMLAGRKINDLQEVLSVLSPYADIRIIRIMP 506
+ G+++N + PY + I I P
Sbjct: 500 RQKMMGKRVNYACRSVISPDPYLAVNEIGIPP 531
>07_03_1406 + 26343915-26346032
Length = 705
Score = 31.1 bits (67), Expect = 1.0
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = +3
Query: 129 KIGFVGGGNMSTAIVQGILKNDAYPASNIWVSGPHLENLQKWSLLNTNVS---IKNSDVV 299
K G G +S A+V K ++ + +++ WS L S + N V
Sbjct: 288 KSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVS 347
Query: 300 NNCEIIFLGIKPNKLETA-VQQCLNGIESLSKKKSILFVSMLAGRKINDLQEVLSVLSPY 476
CE+I LGI PN A + CL+ ++ + K I S+ G + ++ V +++ Y
Sbjct: 348 LFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEF-VVSALIDLY 406
Query: 477 ADIRIIRI 500
+ +IR+
Sbjct: 407 SKQGLIRV 414
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 738 LEEHLASQHHRXRLLSQYK*MQVHKQSKLQVCPLLVLQLFHIVQCYS-IDLPKIYIDLVK 562
+EE ++ H R + ++ S ++ PL L+ FHI C S +D+P + L +
Sbjct: 550 MEELMSLIHLRSLSIEHCDNLEGKGSSSEEIMPLYYLEKFHIKDCKSLLDIPTMPASLEE 609
Query: 561 HCYPVC 544
C +C
Sbjct: 610 LCLLLC 615
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 105 TNNMSNNFKIGFVGGGNMSTAIVQGILKNDAYPA 206
TNN N ++ FVG G+ + A +G + AYPA
Sbjct: 87 TNNKITNLQVSFVGHGHDTPADGEGQFADAAYPA 120
>03_04_0123 +
17475020-17475243,17475367-17475445,17476295-17476393,
17476499-17476682,17477139-17477206,17477530-17477787,
17477996-17478049,17478149-17478355,17478507-17478633,
17479409-17479575
Length = 488
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 744 PLLEEHLASQHHRXRLLSQYK*MQVHKQSKLQ 649
P ++HL +Q HR +L+ + Q+H Q +L+
Sbjct: 264 PSPQQHLTAQQHRQKLMQTSQQQQLHAQQQLR 295
>09_04_0619 -
19001350-19001359,19001737-19001800,19001955-19002099,
19002434-19002917,19003175-19003260,19003417-19003484,
19003565-19003709,19004561-19004677
Length = 372
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 325 PRNIISQLLTTSEFFMLTFVFKSDHF 248
PR +++ LT S F ML + K DHF
Sbjct: 5 PRQVVAGFLTLSMFVMLGNMIKHDHF 30
>08_01_0776 +
7533790-7533984,7534234-7534419,7534542-7534631,
7535284-7535368,7535759-7535925,7536250-7536438,
7537183-7537296,7537391-7537510,7537590-7537712,
7538217-7538315,7538735-7538791,7539272-7539318,
7539391-7539534,7540028-7540205,7540663-7540743,
7540926-7541009,7541416-7541616
Length = 719
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 638 NGHTWSFDCLWTCIYLYCDRSLXRW 712
N H W +CL C+Y + + L RW
Sbjct: 246 NPHMWLQECLSDCLYSFGEPFLTRW 270
>09_04_0245 +
15995689-15995742,15995979-15996075,15996165-15996185,
15996442-15996573,15996707-15996834,15996919-15997203,
15997391-15997521,15999700-15999817,16000609-16000703,
16001437-16001511,16001860-16001911,16002767-16002859,
16003625-16003690,16003785-16003867,16003942-16004054,
16005271-16005410,16005569-16005643,16006084-16006160,
16006426-16006514,16008039-16008085,16009004-16009138,
16009298-16009345,16009605-16009667,16009709-16009730,
16010284-16010458,16014250-16014321,16014887-16014958,
16015904-16016005,16016197-16016225,16016333-16016403,
16016549-16016597,16016684-16016784,16017495-16017623,
16017683-16017752,16017975-16018194,16019368-16019389,
16019457-16019604,16021569-16021693,16022344-16022774,
16022984-16023110,16023241-16023292,16023351-16023502
Length = 1461
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 165 AIVQGILKND-AYPASNIWVSGPHLENLQKWSLLNTNVSIKNSDVVNNC-EIIFLGIKPN 338
+IV ++K P + V+GP L+KW+L N N+ + D +++C +I L N
Sbjct: 779 SIVFALIKQQPTLPLPKLPVAGP----LRKWNLANNNLEGQIPDNISSCINLISLNFSNN 834
Query: 339 KL 344
L
Sbjct: 835 NL 836
>01_07_0135 + 41342118-41342181,41342326-41343260
Length = 332
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 96 LCATNNMSNNFKIGFVGGGNMSTAIVQGILKNDAYPASN 212
L A N++ +GG +ST++ QG++ N +YP SN
Sbjct: 128 LPAMKNLNAALAAAGLGGVGVSTSVSQGVIAN-SYPPSN 165
>10_08_0585 - 18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 261 LNTNVSIKNSDVVNNCEIIFLGIKPNKLETAVQQCLNGIESLSKKKSIL 407
+NTN KN + + +C+++++ K + V L +E+L KK L
Sbjct: 901 INTNDEGKNREYLLSCDLLWVLEHYQKCDRVVTPTLKTVETLLSKKVFL 949
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,249
Number of Sequences: 37544
Number of extensions: 379651
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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