Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G06
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567...    29   3.6  
03_04_0006 + 16257288-16259522                                         29   3.6  
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280...    29   4.7  
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432...    29   6.2  

>07_03_1395 -
           26255776-26256043,26256194-26256414,26256550-26256786,
           26257476-26257776,26258027-26258106
          Length = 368

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 493 SCRLVLVFAGLVYLTMTITTPALMLHGLDIAVASYFITVYNTYARQLENE 642
           S RL+L  AGL Y    +TT  ++ + + I VA      +  YA++  +E
Sbjct: 280 SGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDE 329


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 606 GVQYLRQTAGE*AVVNSSPT*KPDQGRLIHRSSHNG 713
           G Q  R TAG  A  N+ P+  PD GRL+ RS+ +G
Sbjct: 483 GRQQRRLTAG--ASNNAFPSSSPDGGRLVFRSTRDG 516


>06_01_0390 +
           2802334-2802339,2802461-2802618,2802755-2802826,
           2802967-2803114,2803234-2803503,2803741-2803904,
           2804184-2804236,2804302-2804496,2804597-2804694,
           2804787-2804891
          Length = 422

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 169 FILG-YLTM-FTNVYNTGLLITLT-NYIGAGSHSFDRTTSFDSIDL 297
           FI G Y+ + F N  N+ L I LT NYI A S S   T +FD ID+
Sbjct: 75  FIYGSYIGLHFANENNSFLAIKLTVNYIIAASSSNIYTKTFDGIDV 120


>09_03_0042 +
           11842263-11842698,11842799-11842896,11843082-11843217,
           11843349-11843509,11843603-11843753,11843855-11843952,
           11844142-11844277,11844404-11844532,11844622-11844720,
           11844814-11844909,11845002-11845100,11845201-11845296,
           11846394-11846628,11846752-11846873,11846993-11847114,
           11847275-11847345,11847940-11848027,11848374-11848439,
           11848676-11848795
          Length = 852

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +1

Query: 172 ILGYLTMFTNVYNTGLLITLTNYIGAGSH-SFD-----RTTSFDSIDLEELSEPTTTLQP 333
           +L  L + T      +  TL + +   +H ++D     R T+FDS++L+ +  PT+ +  
Sbjct: 620 VLACLNLETLQPRNSICTTLQSELSGSAHPTYDHQTVMRPTTFDSLELDMVDTPTSDVSN 679

Query: 334 AQQSSE 351
           A++ S+
Sbjct: 680 AKEQSQ 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,489,532
Number of Sequences: 37544
Number of extensions: 470138
Number of successful extensions: 1185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)