Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G06
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical ...    28   9.7  
AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical ...    28   9.7  
AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical ...    28   9.7  

>AC024759-4|AAK68434.1|  356|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.4 protein.
          Length = 356

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 534 DNDHHDSGLNVTWLGHCCSILLHHGVQYL 620
           D+ H +SGL  TWLGH   ++   GV+++
Sbjct: 76  DDFHSESGLFATWLGHATVLVDLEGVKFV 104


>Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical
           protein C53B4.6 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +1

Query: 370 VGFVLLMTIVINAAWLLVNIACVVGLHRRRPGNIKFYVLFASCRLVLVFAG---LVYLTM 540
           VG  LL   +I +A+L +        H +    + FYV F S  L   F G   +     
Sbjct: 163 VGLALLSFALILSAYLGLYQETFYQKHGKHNEEMMFYVHFLSIPL-FAFVGDDMVPAFHA 221

Query: 541 TITTPALMLHGLDIAVASYFITVY 612
             +TP+ ++ GLD  V S ++ ++
Sbjct: 222 AYSTPSFVIAGLDTVVPSAWVYIF 245


>AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3a protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 534 DNDHHDSGLNVTWLGHCCSILLHHGVQYL 620
           D+ H +S L  TWLGH   ++   GV+++
Sbjct: 74  DDFHSESDLFATWLGHATVLVDLEGVKFV 102


>AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3c protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 534 DNDHHDSGLNVTWLGHCCSILLHHGVQYL 620
           D+ H +S L  TWLGH   ++   GV+++
Sbjct: 95  DDFHSESDLFATWLGHATVLVDLEGVKFV 123


>AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3b protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 534 DNDHHDSGLNVTWLGHCCSILLHHGVQYL 620
           D+ H +S L  TWLGH   ++   GV+++
Sbjct: 95  DDFHSESDLFATWLGHATVLVDLEGVKFV 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,023,906
Number of Sequences: 27780
Number of extensions: 394630
Number of successful extensions: 945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)