Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G04
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   5.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -1

Query: 639 HFDPFSDPIYV*CHSGLQPLSGTDQDEALLH 547
           HF P +  +   CH   + L+  +  +++ H
Sbjct: 395 HFQPLNSAVCALCHKVFRTLNSLNNHKSIYH 425


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 457 SCVHPSAIFLKPNSRYVFGDVLKSCDRV 374
           SC+ P ++F K +    F    K C  +
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKCTEI 81


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 457 SCVHPSAIFLKPNSRYVFGDVLKSCDRV 374
           SC+ P ++F K +    F    K C  +
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKCTEI 81


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 296 EISPTSMVAAAGFQHIRLYDLSS 364
           ++SP ++   +GF HI +  +SS
Sbjct: 108 DLSPAAVSYTSGFYHIPVIGISS 130


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 743 PHVAVALVINSRHHLAGWINSY 678
           PHVA   +  +RHH   +  SY
Sbjct: 763 PHVAAYFLSRARHHDDLYSQSY 784


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,235
Number of Sequences: 438
Number of extensions: 5166
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)