Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G03
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   2.2  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   3.0  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   6.8  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    24   9.0  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 40  ISIYFLRIKVNKNINKMSAWRQAGLT 117
           ++ Y  +I + K I+ +  WRQ GLT
Sbjct: 271 VNSYHEQITLKKQISDLQEWRQMGLT 296


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 154  EAPWLRCLSSLCKLNQLASKRSFC 83
            +AP L  LS++C  +  + KR FC
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFC 990


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = -3

Query: 365 TILHKLIVDDFHACWLTIPSSLWNSFLEV*LTPLT*SFSCAGRPLAQGVTLT*DSSRFNA 186
           T L  ++VDD     +  P  ++ S  E  LT    +      PLAQ + L  D + + +
Sbjct: 425 TALLGVMVDDLITKGVKEPYRVFTSRSEYRLTTRADNADLRLTPLAQSIGLLDDQTHWES 484

Query: 185 SARNSCFSDLRSTLAAMF 132
             R     D  + +A  F
Sbjct: 485 FQRTKSLLDFSNKIAKEF 502


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 323 WLTIPSSLWNSFLE 282
           WL+IP+S W++F +
Sbjct: 507 WLSIPASRWSTFYD 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,605
Number of Sequences: 5004
Number of extensions: 26254
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)