Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_G03
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           59   2e-09
07_01_1017 - 8662144-8662466,8662554-8663535                           27   5.1  
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    27   6.7  
09_02_0500 - 9950007-9950303,9950728-9951942,9952171-9952383           27   8.8  
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104...    27   8.8  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = +1

Query: 97  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 240
           WR AG+TYI YSN+ A ++RR LK+  ++EA  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>07_01_1017 - 8662144-8662466,8662554-8663535
          Length = 434

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 201 RISRQSHTLGQRTTCT*KGLSQRCKLDLQKAVPK*RRN 314
           R   +  TL  +   T  G    CK+DLQK +P   +N
Sbjct: 121 RFFHEEFTLTWKGLSTLLGFHDSCKIDLQKGIPGFEKN 158


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 386 LNSIIYCTILHKLIVDDFHACWLTIPSSLWN 294
           L+ ++  T L +L++DD   C L +PS   N
Sbjct: 452 LDLLLLATDLRQLVIDDVDCCDLDVPSEFDN 482


>09_02_0500 - 9950007-9950303,9950728-9951942,9952171-9952383
          Length = 574

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 201 RISRQSHTLGQRTTCT*KGLSQRCKLDLQKAVPK*RRN 314
           R  R+  TL  +   T  G    CK+DLQK +    +N
Sbjct: 507 RFFREEFTLTWKGLSTLLGFQDSCKIDLQKGISGFEKN 544


>06_02_0280 -
           13708651-13708839,13708895-13709164,13709889-13710476,
           13710511-13710686,13710897-13711029,13711193-13711462,
           13711521-13711889
          Length = 664

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 201 RISRQSHTLGQRTTCT*KGLSQRCKLDLQKAVPK*RRN 314
           R   + +TL  +   T  G    CK+DLQK +    +N
Sbjct: 611 RFFHKEYTLSSKGLSTFLGFHDSCKMDLQKGISGFEKN 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,382,295
Number of Sequences: 37544
Number of extensions: 162588
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)