Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_G02
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 31 1.6
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 30 2.8
04_04_0786 - 28052981-28053040,28053123-28053222,28053447-280535... 29 4.8
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 29 6.4
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243... 28 8.5
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 28 8.5
01_03_0315 + 14947450-14948284,14948439-14948540,14948656-149488... 28 8.5
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 310 VLRIFADVVLHVPEHRRLPLFKKLLETLGPSQFLWVFLALLIETHIAHFN 459
V ++F ++ V EHRRL L LL TLG + L + L+ + + +
Sbjct: 1304 VKQLFIKALVDVVEHRRLTLMVYLLRTLGERKCLSTVIMCLLHSLVGRIS 1353
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 470 RRIKGNQEL*PTENRHLTDSILAKMSSL 553
+RI GN++ PTE + +TD IL K S L
Sbjct: 353 KRIFGNEDNHPTELKEVTDEILRKCSGL 380
>04_04_0786 -
28052981-28053040,28053123-28053222,28053447-28053574,
28053654-28053821,28053901-28054013,28054135-28054287,
28054385-28054528,28054794-28055529
Length = 533
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 427 LLIETHIAHFNEPKKKDKRQSRTL---ADRESPLNRLDFGQNVVLE 555
+L H+ HF +D + L AD ++PL +DFG +V +E
Sbjct: 199 ILTVVHVCHFMGVIHRDLKPENFLLASADDDAPLKAIDFGLSVFIE 244
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 427 LLIETHIAHFNEPKKKDKRQSRTLADRESPLNRLDFG 537
LL H H N+ +D + S L D E L DFG
Sbjct: 138 LLTGLHYCHINQVLHRDIKGSNLLIDNEGNLKLADFG 174
>07_03_0832 -
21823518-21823826,21823920-21824070,21824148-21824385,
21824469-21824679,21824789-21825009,21825590-21825697,
21825813-21826142,21826740-21827050,21828969-21829651
Length = 853
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 355 CVREHARQRQQIYEALGRLDSEAAAIPSP 269
CV++HA++R I + L S+++++P P
Sbjct: 788 CVQDHAQERPDIPAVILMLSSDSSSLPMP 816
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 427 LLIETHIAHFNEPKKKDKRQSRTLADRESPLNRLDFG 537
LL H H N+ +D + S L D E L DFG
Sbjct: 138 LLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFG 174
>01_03_0315 +
14947450-14948284,14948439-14948540,14948656-14948840,
14949444-14949654,14949816-14949999,14950108-14950258,
14950371-14950679
Length = 658
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 355 CVREHARQRQQIYEALGRLDSEAAAIPSP 269
CV+E+A R + + + L SE+A +P P
Sbjct: 593 CVQENADDRPTMSDVVAMLSSESAVLPEP 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,213,818
Number of Sequences: 37544
Number of extensions: 507035
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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