Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_G02
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 32 0.61
Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical pr... 30 1.9
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 29 4.3
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 29 4.3
Z74029-5|CAA98433.2| 520|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical pr... 28 10.0
M55997-1|AAA27995.1| 308|Caenorhabditis elegans cuticlin 1 prot... 28 10.0
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
ZK430.1 protein.
Length = 1650
Score = 60.5 bits (140), Expect = 2e-09
Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 1/210 (0%)
Frame = +1
Query: 112 PEQVLNHTMEIFTFMGSSVLRHDDAYSFQXXXXXXXXXXXXXVKLDKNIEDHTEKELQQL 291
P V+ H M +FTFMG+ +LR D+ + + N QQ
Sbjct: 734 PNSVVKHVMSVFTFMGNGMLRKDNELTLSIVEKTVESLFSTII----NSSGQAVLTKQQQ 789
Query: 292 QNRVVPVLRIFADVVLHVPEHRRLPLFKKLLETLGPSQFLWVFLALLIETHIAHFNEPKK 471
+++ + R+FA + +P HRR + + + + V L +L+ + A +
Sbjct: 790 TEKLIELARLFAASAIDIPAHRRARIAQAIARAVQAENASTVVL-VLVSSFCARWQRSSD 848
Query: 472 KDKRQSRTLADRESPLNRLDFGQNVVLEFPPEVCLENFIKLILYIRSLPIQKDDESMETD 651
+++ + + D ++ P L + +++ Y+R L K +S T
Sbjct: 849 AAAQEAMKRGSDQDAYD--DLAIELLSALNPFEQLSSVLEMCEYVRRLGGDKPAKSTTTK 906
Query: 652 ID-PSEIFSVNGHTAIQLRHYKYVIITFMN 738
D + IF T ++RH++YV++T ++
Sbjct: 907 KDLDTMIFDRTAQTLPRIRHFRYVVVTLIS 936
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 31.9 bits (69), Expect = 0.61
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 421 LALLIETHIAHFNEPKKKDKRQSRTLADRESPLNRLDFGQNVVLEFPPEVCL-ENFIKLI 597
L+++ E I+ EP K K + R +A +++PL+ D+ F PE+C+ E+ KL
Sbjct: 620 LSVIDENKISTSPEPVLKRKNKER-IARQQNPLHSFDWLNVSPRRFRPELCIKEDLPKLF 678
Query: 598 LYIRS---LPIQKDDESMETDIDP 660
+R+ + ++ ++ ET P
Sbjct: 679 KLVRNSTKISLESPTQTSETTETP 702
>Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical
protein T04C10.2b protein.
Length = 469
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = -3
Query: 437 SINKARNTQRN*LGPSVSSSFLNNGNLLCSGTCKTTSANIRSTG 306
S N R T N LG + S+ +N NLL SGT TT N TG
Sbjct: 377 STNGTRKTPENFLGEN--SNLVNLDNLLGSGTPSTTGGNPFLTG 418
>Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical
protein T04C10.2a protein.
Length = 467
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = -3
Query: 437 SINKARNTQRN*LGPSVSSSFLNNGNLLCSGTCKTTSANIRSTG 306
S N R T N LG + S+ +N NLL SGT TT N TG
Sbjct: 375 STNGTRKTPENFLGEN--SNLVNLDNLLGSGTPSTTGGNPFLTG 416
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 29.1 bits (62), Expect = 4.3
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Frame = +1
Query: 175 HDDAYSFQXXXXXXXXXXXXXVKLDKNIEDHTEKELQQLQNRVVPVLRIFADVVLHVPEH 354
HDD +S + ++K IE EK+ Q L+ + + R +V +
Sbjct: 713 HDDRHSLEDMDVEVSSDGETVSNVEK-IECMEEKKRQDLER--IAIAR--TPIVKKCKKR 767
Query: 355 RRLPLFKKLLETLGPSQFLWVFLALLIETHI-AHFNEPKKKDKRQSRTLADRESPLNRL 528
L +K+ E + F AL + H+ A +E K+K +R+ + + E P N L
Sbjct: 768 MMDELSRKVAEDIRQQIMRQCFAALDEKLHLKAIADEEKRKKEREEKARQEAEKPSNHL 826
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 29.1 bits (62), Expect = 4.3
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Frame = +1
Query: 175 HDDAYSFQXXXXXXXXXXXXXVKLDKNIEDHTEKELQQLQNRVVPVLRIFADVVLHVPEH 354
HDD +S + ++K IE EK+ Q L+ + + R +V +
Sbjct: 713 HDDRHSLEDMDVEVSSDGETVSNVEK-IECMEEKKRQDLER--IAIAR--TPIVKKCKKR 767
Query: 355 RRLPLFKKLLETLGPSQFLWVFLALLIETHI-AHFNEPKKKDKRQSRTLADRESPLNRL 528
L +K+ E + F AL + H+ A +E K+K +R+ + + E P N L
Sbjct: 768 MMDELSRKVAEDIRQQIMRQCFAALDEKLHLKAIADEEKRKKEREEKARQEAEKPSNHL 826
>Z74029-5|CAA98433.2| 520|Caenorhabditis elegans Hypothetical
protein C45B11.1b protein.
Length = 520
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 51 PEPSNSPSCIDPI-VARSVHVARASSQSYNGNFHF 152
P+P PSCI P+ VA V R S YN F
Sbjct: 57 PKPMVDPSCITPVDVAELKTVIRGPSSRYNSPLPF 91
>Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical
protein F39D8.1c protein.
Length = 924
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 24 CVVQCIRVDPEP-SNSPSCIDPIVARSVHVARASSQSYNGN 143
C+ QC+ P+P SP C+ +++ ARA + G+
Sbjct: 21 CLSQCVNCAPQPIYQSPCCVPTSNVQTIQSARAFTNGAQGS 61
>Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical
protein F39D8.1b protein.
Length = 919
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 24 CVVQCIRVDPEP-SNSPSCIDPIVARSVHVARASSQSYNGN 143
C+ QC+ P+P SP C+ +++ ARA + G+
Sbjct: 16 CLSQCVNCAPQPIYQSPCCVPTSNVQTIQSARAFTNGAQGS 56
>Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical
protein Y49E10.4 protein.
Length = 436
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +1
Query: 517 LNRLDFGQNVVLEFPPEVCLENFIKLIL------YIRSLPIQKDDESMETDID 657
LN +++G+ VLE P NF+K++ + LP+ +D + + D+D
Sbjct: 379 LNAVNYGKGRVLEIKPTHLSNNFLKIVETQPWDGKDKELPVMEDIDLSDVDMD 431
>M55997-1|AAA27995.1| 308|Caenorhabditis elegans cuticlin 1
protein.
Length = 308
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 369 VQKTARNTGTKSVPLGVPSFI 431
V++ A +TG S P+G+PSF+
Sbjct: 263 VRRRATSTGISSTPIGLPSFL 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,981,111
Number of Sequences: 27780
Number of extensions: 457652
Number of successful extensions: 1179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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