Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F23
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-7|CAB63437.3|  511|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AF106582-5|AAC78216.1|  327|Caenorhabditis elegans F-box a prote...    26   7.8  

>Z81481-7|CAB63437.3|  511|Caenorhabditis elegans Hypothetical
           protein C38D9.6 protein.
          Length = 511

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 135 WNTKSIISFSDLPIIVQ--KSDCRL 203
           +NTKSI+ F +  +I Q  K DC L
Sbjct: 265 YNTKSILQFDEKEVIYQDKKDDCNL 289


>AF106582-5|AAC78216.1|  327|Caenorhabditis elegans F-box a protein
           protein 203 protein.
          Length = 327

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 126 DCQWNTKSIISFSDLPIIV 182
           D  W    I+SFSD+PI V
Sbjct: 88  DINWKKPKILSFSDIPISV 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,310,415
Number of Sequences: 27780
Number of extensions: 108165
Number of successful extensions: 211
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)