Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F22
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        171   5e-43
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   29   2.8  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     28   6.5  
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   6.5  
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)                    28   6.5  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   8.6  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  171 bits (416), Expect = 5e-43
 Identities = 75/128 (58%), Positives = 100/128 (78%)
 Frame = +3

Query: 216 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 395
           MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF 
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616

Query: 396 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 575
           S+KELA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  +++E+RNFLGEKY
Sbjct: 617 SRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKY 676

Query: 576 IRRVKMAP 599
           +RRV+M P
Sbjct: 677 VRRVRMRP 684


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 655 LPSMINSSFCLGELTTVTPGAIFTLLMYFSPKKLRISIIE 536
           +P  I S   LG+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 430 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 287
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +3

Query: 246 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 380
           K+ DGL VH+ ++ V  K P+    + KR  + L A+ I + +P + KV
Sbjct: 4   KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 166 NICEVMFHTCSCF*AQT*SKL*QIRKSKSQTGL 264
           N+  V FH C C  A   S L  ++K++S TGL
Sbjct: 645 NLFFVTFHLCHCVFASVISVLPAVQKAQSGTGL 677


>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -1

Query: 368 TRVYHANVNSQVFKVP-------FENSAGPFNCHQTRFHMDRKP 258
           TR YH NV   VF V        F  S G  N HQ  +  DR+P
Sbjct: 57  TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
 Frame = +3

Query: 399  KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE-IRNFLG 566
            K+ LAA + V +   N+ KGVT+G    K R V    PI    V T+G  + + +    G
Sbjct: 948  KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007

Query: 567  EKYIRRVKMAPGVTVVNS-PKQKDELIIEGNSL--------EDVSXSAALIQQSTTV 710
                + + + PG  V    P  +  ++ +G  +        E VS    ++ Q T V
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQGTVVTKGMLVTPERVSLQGTVVTQGTAV 1064


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 273  VKSRLVTVKGPRGVLKRNFKHL 338
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,393,984
Number of Sequences: 59808
Number of extensions: 470269
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)