Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F22
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   203   1e-52
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.81 
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  203 bits (495), Expect = 1e-52
 Identities = 92/165 (55%), Positives = 123/165 (74%)
 Frame = +3

Query: 216 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 395
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 396 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 575
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 576 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSXSAALIQQSTTV 710
           +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST V
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAV 165


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 466 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 329
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +3

Query: 333 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 497
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 498 AHF 506
            +F
Sbjct: 421 LNF 423


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 260 PVWDFDFLICYNLLHVWA*KQEQV*NITSQMFTKFFDTFSQFITKISVITHFRSLNII*K 81
           P   F+  ICY+++HV      Q  ++ S  +T F  TF ++     V+   +++ I+  
Sbjct: 78  PCRHFEAFICYSMMHVL-----QTSSLISG-WTVFLTTFMKYQAAKHVVLPKKNIWIVIC 131

Query: 80  IIVANFHY-VGCEIYL 36
           +I A     V CEIYL
Sbjct: 132 VIFAIISVSVACEIYL 147


>Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical
          protein R10H10.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 83 KIIVANFHYVGCEIYLDFFRNNT 15
          K+IV+N  ++GC +  DF+ N T
Sbjct: 30 KVIVSNDDFIGCPVNNDFYYNGT 52


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 459  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 596
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,691,605
Number of Sequences: 27780
Number of extensions: 361088
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)