Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F18
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.36 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 431  SFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPAPS 294
            SF+ +  +   +E  PS+  PLTS R+         C ++A+PA S
Sbjct: 897  SFHSNGAK-EEDEDKPSV-SPLTSPRQPAETHAGSPCRNSASPASS 940


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 371 PLTSQRKATVLLTSQTCSDTAAPAPST 291
           P   Q  AT + +S   S  AAP P+T
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAPPPAT 38


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/42 (16%), Positives = 19/42 (45%)
 Frame = +1

Query: 280 SVTIVDGAGAAVSEQVCEVSSTVALRCEVKGLKMEGGPSLLW 405
           +V  V G  A  S + C ++  + +  ++  +  +    ++W
Sbjct: 193 AVCFVPGVVAMFSRKPCSINENLKMGLDIASITAQASSFVVW 234


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/42 (16%), Positives = 19/42 (45%)
 Frame = +1

Query: 280 SVTIVDGAGAAVSEQVCEVSSTVALRCEVKGLKMEGGPSLLW 405
           +V  V G  A  S + C ++  + +  ++  +  +    ++W
Sbjct: 193 AVCFVPGVVAMFSRKPCSINENLKMGLDIASITAQASSFVVW 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,766
Number of Sequences: 336
Number of extensions: 3586
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)