Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F18
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.22 
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   2.8  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   3.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 476 APNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSI-FKPLTSQRKATVLLTSQTCSDTAAPA 300
           +P   + L PP ++++F+K +    SNE   ++  KP  S  + T L+  Q  S    P+
Sbjct: 589 SPEKQKVLSPPPIITNFDKETLA--SNEAHEAVPQKP--SAPQVTRLMAPQDSSSVVTPS 644

Query: 299 PSTIV 285
           P++++
Sbjct: 645 PTSLL 649


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 488 LAPFAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPP-SIFKPLTSQRKATVLLTSQ 327
           L+ F P   + L   +  S F KS       +GPP  IF P  +Q  +  L  +Q
Sbjct: 201 LSSFCPPGGKLLKVSIYPSEFGKSRMAAEHVQGPPRDIFTPADNQPSSAELHEAQ 255


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 374 KPLTSQRKATVLLTSQTCSDTAAPAPSTIVT 282
           KP  SQ+K T  LTS+ C  ++   P+ I T
Sbjct: 390 KPAESQKKYTKRLTSEFCISSSLRHPNVIHT 420


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 470 NSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFK 372
           +S+     P V S  N S      NEGPPS FK
Sbjct: 3   SSINNSSQPTVPSISNNSHGDSFVNEGPPSNFK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,849
Number of Sequences: 5004
Number of extensions: 56971
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)