Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F18
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532...    30   2.2  
02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504           30   2.2  
01_06_0877 + 32662978-32663179,32663718-32663951,32664080-326641...    30   2.2  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    29   5.0  
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436...    29   5.0  
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854...    28   8.8  

>05_05_0165 +
           22851863-22852566,22852811-22852964,22853112-22853261,
           22853769-22853930,22854070-22854242,22854330-22854396,
           22854556-22854722,22855216-22855374,22856187-22856276,
           22856392-22856483,22856587-22856681,22857328-22857405,
           22858364-22858459,22859132-22859206,22859290-22859381,
           22859462-22859624,22859734-22859794,22860016-22860116,
           22860567-22860614
          Length = 908

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 527 LVGTRVQWPGRRHQHHYRH 583
           ++G  + W GR H+HH+ H
Sbjct: 153 VLGAELDWDGRGHEHHHHH 171


>02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504
          Length = 485

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 277 VSVTIVDGAGAAVSEQVCEVSSTVALRCEVKG-LKMEGGPSLLW 405
           V VT   G G    +  C ++S  + RCE +G +++EG  S ++
Sbjct: 96  VVVTAAAGGGGGKRKPTCRMTSKRSERCEARGDIRVEGNASTIY 139


>01_06_0877 +
           32662978-32663179,32663718-32663951,32664080-32664143,
           32664250-32664379,32664483-32664624,32664806-32665063,
           32665168-32665252,32665609-32665711,32666281-32666406,
           32666476-32666589,32666769-32666887,32666993-32667080,
           32667154-32667246,32667325-32667414,32667522-32667641,
           32667782-32667877
          Length = 687

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 364 PRSVKPQYC*LHRLVQIRPHQRHPRSSLILKKIY 263
           PR+ +  Y  LHR    +P + HPR + +L+ IY
Sbjct: 582 PRNPEVVYAILHRQEVFQPFKNHPRFNELLENIY 615


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 349 ALRCEVKGLKMEGGPSLLWYRKDDLLNDD 435
           AL   V  L+ EGG S +W RKD    DD
Sbjct: 311 ALSVSVYALEAEGGGSWVWVRKDGRSMDD 339


>01_06_1153 -
           34942608-34942975,34943082-34943330,34943516-34943625,
           34944698-34944771,34945237-34945306,34945848-34945947,
           34946045-34946120,34946572-34946646,34947067-34947156,
           34947238-34947354,34947457-34947567,34947649-34947788,
           34947962-34948043,34948224-34948303,34948938-34949046,
           34949295-34949417,34949972-34950044,34950338-34950489,
           34951029-34951127,34952258-34952383
          Length = 807

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 401 SNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPAPST 291
           S+ GP S      SQ  AT  +TS   S T A APST
Sbjct: 579 SDHGPVSSANASNSQISATSSVTSDNRSSTVAYAPST 615


>02_05_0070 -
           25584690-25584806,25585151-25585312,25585396-25585491,
           25585894-25585955,25586035-25586110,25586195-25586277,
           25586456-25586778,25586882-25586928,25587014-25587150,
           25587250-25587322,25588159-25588251,25588543-25588632,
           25588684-25588786,25588869-25588981,25589181-25589778,
           25589888-25590065,25590277-25590296,25590713-25590882,
           25591245-25591485,25592997-25593199
          Length = 994

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 190 PFHQYFLMTLSCSIIVSKPTLQTTDIFF*VSVTIVDGAGAAVSEQVCEVSSTVALRCEVK 369
           PF  Y L  +   ++  K   Q+   F  V   +     AA+ E +C      A R  + 
Sbjct: 396 PFSLYALSRMGFILLKRKDEAQSEISFCAVCFGVTKSLEAALEESICYSERIDAARATID 455

Query: 370 GLKMEG 387
            +K+EG
Sbjct: 456 QVKVEG 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,393,049
Number of Sequences: 37544
Number of extensions: 395412
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)