Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_F18
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9) 32 0.55
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_34312| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_7200| Best HMM Match : Tubulin-binding (HMM E-Value=5.1) 29 5.1
SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48) 28 6.8
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36) 28 6.8
SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 32.7 bits (71), Expect = 0.32
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +1
Query: 235 VSKPTLQTTDIFF*VSVTIVDGAGAAVSEQVCEVSSTVALRCEVKGLKMEGGPSLLWYRK 414
V+K L F V V + +QV + +STV L C+ G P+ WYR
Sbjct: 329 VAKNVLGKARAFASVGVLVPIQMAHKPEDQVVQDNSTVMLNCQATGFP---DPNYTWYRN 385
Query: 415 DDLLNDDTTRGGISVRTEFGAN 480
+ +L T+ G + T+ A+
Sbjct: 386 NQVLTTLTSDNGSFIITKATAD 407
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -3
Query: 479 FAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPA 300
F+P + + P S ++SS R SNEG S +PL K L+T+++ T A
Sbjct: 486 FSPLKDKNTLSP-AQSQTSESSSRSKSNEGFRSAKRPLFQAEKPEPLVTTESIRKTLLLA 544
Query: 299 PST 291
P T
Sbjct: 545 PDT 547
>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
Length = 857
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = -3
Query: 479 FAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPA 300
F+P + + P S ++SS R SNEG S +PL K L+T+++ T A
Sbjct: 270 FSPLKDKNTLSP-AQSQTSESSSRSKSNEGFRSAKRPLFQAEKPEPLVTTESIRKTLLLA 328
Query: 299 PST 291
P T
Sbjct: 329 PDT 331
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 476 APNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPAP 297
AP S TL P + ++S +S+ + P + F P T++ T L T + + PAP
Sbjct: 1882 APES--TLAPEITIAS--ESTVAPGTTMAPETTFTPETTKAPETTLPPETTMASESTPAP 1937
Query: 296 -STIVTDT 276
ST+ +T
Sbjct: 1938 ESTLAPET 1945
>SB_34312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Frame = +2
Query: 476 QTVLVPCSAWPACELTTLVGTRV---QWPGRRHQHHYRHMSYCMSLKVRVLQSCIKVETR 646
Q V P + LTT++G QW GRR Q+ R + Y L V Q +TR
Sbjct: 10 QAVTHPSTNRALLSLTTVIGREPVLSQWYGRRRQNCVRSIYYITVLLVLRKQKVNAYQTR 69
Query: 647 ----VPHPS 661
V HPS
Sbjct: 70 YSQAVTHPS 78
>SB_7200| Best HMM Match : Tubulin-binding (HMM E-Value=5.1)
Length = 294
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 425 NKSSF-RYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPA 300
+KSSF + +S GP ++ P+ Q + +T+ CSD P+
Sbjct: 176 DKSSFSKVNSRRGPLTVTSPIRHQNEGYGNVTTAECSDNDKPS 218
>SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48)
Length = 390
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 560 RHQHHYRHMSYCMS 601
RHQHH R + YC+S
Sbjct: 208 RHQHHLRFLQYCIS 221
>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
Length = 444
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 458 TLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQT 324
T MP +++ + +F H N GP + +T+ T+LLTS T
Sbjct: 252 TYMPAMILVILSWCTFWIHRNAGPARVTLSITT-ILTTILLTSST 295
>SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 521 TTLVGTRVQWPGRRHQHHYRHMSYCMSLKVRVLQSCIKVETRVPHPS*SLRRYAFF*KYY 700
++L + + + H HHY H L + LQ +R + L ++A + YY
Sbjct: 39 SSLTPSSLSYQHHHHHHHYHHHPSSSLLSIEFLQPGGSTSSRAAATAVEL-QFALYESYY 97
Query: 701 RNL 709
+L
Sbjct: 98 NSL 100
>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 491 PCSAWPACELTTLVGTRVQWPGRRHQHHYRHMSYCMSL 604
P SA P+ +T ++ + H HHYRH Y SL
Sbjct: 275 PLSALPSLCITLIITVIMHRLHHHHHHHYRH--YASSL 310
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,663,611
Number of Sequences: 59808
Number of extensions: 469458
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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