Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_F18
(733 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT009771-1|AAP88773.1| 614|Homo sapiens histone deacetylase 7A ... 31 5.6
BC064840-1|AAH64840.1| 954|Homo sapiens HDAC7A protein protein. 31 5.6
BC020505-1|AAH20505.2| 711|Homo sapiens HDAC7A protein protein. 31 5.6
BC006453-1|AAH06453.1| 276|Homo sapiens HDAC7A protein protein. 31 5.6
AY321367-1|AAP84704.1| 915|Homo sapiens histone deacetylase 7A ... 31 5.6
AY302468-1|AAQ18232.1| 991|Homo sapiens histone deacetylase pro... 31 5.6
AL117455-1|CAB55935.1| 878|Homo sapiens hypothetical protein pr... 31 5.6
AK122588-1|BAC56929.1| 308|Homo sapiens FLJ00413 protein protein. 31 5.6
AK027781-1|BAB55363.1| 184|Homo sapiens protein ( Homo sapiens ... 31 5.6
AK024469-1|BAB15759.1| 484|Homo sapiens FLJ00062 protein protein. 31 5.6
AK001190-1|BAA91545.1| 614|Homo sapiens protein ( Homo sapiens ... 31 5.6
AK001032-1|BAA91474.1| 276|Homo sapiens protein ( Homo sapiens ... 31 5.6
AF239243-1|AAF63491.1| 855|Homo sapiens histone deacetylase 7 p... 31 5.6
BC011684-1|AAH11684.1| 490|Homo sapiens GATA zinc finger domain... 30 9.8
AY186731-1|AAO31797.1| 633|Homo sapiens p66 alpha protein. 30 9.8
>BT009771-1|AAP88773.1| 614|Homo sapiens histone deacetylase 7A
protein.
Length = 614
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 475 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 526
>BC064840-1|AAH64840.1| 954|Homo sapiens HDAC7A protein protein.
Length = 954
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 815 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 866
>BC020505-1|AAH20505.2| 711|Homo sapiens HDAC7A protein protein.
Length = 711
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 572 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 623
>BC006453-1|AAH06453.1| 276|Homo sapiens HDAC7A protein protein.
Length = 276
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 137 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 188
>AY321367-1|AAP84704.1| 915|Homo sapiens histone deacetylase 7A
variant 3 protein.
Length = 915
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 776 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 827
>AY302468-1|AAQ18232.1| 991|Homo sapiens histone deacetylase protein.
Length = 991
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 852 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 903
>AL117455-1|CAB55935.1| 878|Homo sapiens hypothetical protein
protein.
Length = 878
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 739 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 790
>AK122588-1|BAC56929.1| 308|Homo sapiens FLJ00413 protein protein.
Length = 308
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 196 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 247
>AK027781-1|BAB55363.1| 184|Homo sapiens protein ( Homo sapiens
cDNA FLJ14875 fis, clone PLACE1002816, weakly similar to
HISTONE DEACETYLASE HDA1. ).
Length = 184
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 45 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 96
>AK024469-1|BAB15759.1| 484|Homo sapiens FLJ00062 protein protein.
Length = 484
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 345 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 396
>AK001190-1|BAA91545.1| 614|Homo sapiens protein ( Homo sapiens
cDNA FLJ10328 fis, clone NT2RM2000588, weakly similar to
HISTONE DEACETYLASE HDA1. ).
Length = 614
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 475 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 526
>AK001032-1|BAA91474.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ10170 fis, clone HEMBA1003690, weakly similar to
HISTONE DEACETYLASE HDA1. ).
Length = 276
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 137 YHVSAKCFGY--MTHQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 188
>AF239243-1|AAF63491.1| 855|Homo sapiens histone deacetylase 7
protein.
Length = 855
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 380 WKVAPRCYGTGKMTC*MMTLLGGASVSARSSVQTVLVPCSAWPACELTTLVGTRV 544
+ V+ +C+G MT +M L GGA V A + C A AC + L+G RV
Sbjct: 776 YHVSAKCFGY--MTQQLMNLAGGAVVLALEGGHDLTAICDASEAC-VAALLGNRV 827
>BC011684-1|AAH11684.1| 490|Homo sapiens GATA zinc finger domain
containing 2A protein.
Length = 490
Score = 29.9 bits (64), Expect = 9.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 491 ELAPFAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSI 378
+L P A + V +MPPLV + S R HS+ GPP +
Sbjct: 90 KLGPQASSQV--VMPPLVRGAQQIHSIRQHSSTGPPPL 125
>AY186731-1|AAO31797.1| 633|Homo sapiens p66 alpha protein.
Length = 633
Score = 29.9 bits (64), Expect = 9.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 491 ELAPFAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSI 378
+L P A + V +MPPLV + S R HS+ GPP +
Sbjct: 233 KLGPQASSQV--VMPPLVRGAQQIHSIRQHSSTGPPPL 268
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,416,256
Number of Sequences: 237096
Number of extensions: 2177673
Number of successful extensions: 4165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4165
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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