Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F18
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical
           protein T13C5.4 protein.
          Length = 220

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 389 PPSIFKPLTSQRKATVLLTSQTCSDTAAPAPSTIVTDT*KNISVVCKVGLLTI 231
           PPSI K  T +++ T   T  T +  ++P PS +  DT  +I +  K+G  ++
Sbjct: 112 PPSITKNPTGEKEKTQDCT--TLTSASSPGPSNLSNDTLVSIEMAPKIGTKSV 162


>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = -3

Query: 476 APNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLT-----SQTCSDT 312
           +P+S+ T + P +  S ++SSF  HSN+    +  P TS    T  L+     S++ +  
Sbjct: 270 SPHSLPTNVAPRIPPS-SRSSFTQHSNDSGVVLSTPPTSSSAKTAGLSPTHNFSRSSTSL 328

Query: 311 AAPAPST 291
             P P+T
Sbjct: 329 RIPTPTT 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,309
Number of Sequences: 27780
Number of extensions: 338478
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)