Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F17
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.68 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   6.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   6.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 311 SSCGNVYDFSLITKKLT*NNSNFDVNKETNRGQ 213
           S  G +YD   + +++  + S  D+N+E  R +
Sbjct: 463 SLAGGLYDEGTVRRRVAVDRSGIDINEEIQRNR 495


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 530 CVVCKAQMPDPKTYKQHFENKHPKND 607
           C  C+       + K+HF++KH ++D
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSD 33


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 513 RHLSMFVWFVRPRCLTLRLTNSILRTNTL 599
           R +S +  F RP  +TL     + R NTL
Sbjct: 327 REISTYFTFTRPCGITLTFHEILKRANTL 355


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 509 VQLSSGRWHCAPAVSSFWTS 450
           +QL+ G W   P +   W S
Sbjct: 97  LQLTGGTWELGPMLCDSWVS 116


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 489 VALCPCCFFILDIFS 445
           +AL P CF + ++FS
Sbjct: 6   IALVPVCFLLGEVFS 20


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 489 VALCPCCFFILDIFS 445
           +AL P CF + ++FS
Sbjct: 6   IALVPVCFLLGEVFS 20


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 254 NSNFDVNKETNRGQGNIPQKTS 189
           NSN  VN+  N    NIP  TS
Sbjct: 536 NSNLTVNQTVNPVAINIPGDTS 557


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 91  YVVNSVLNLIFFKILHCDTQYHRLSRSN 8
           Y+V  +L L+F  ++   T +  L+R N
Sbjct: 315 YMVTVILGLLFHALITLPTIFWFLTRQN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,836
Number of Sequences: 438
Number of extensions: 3677
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)