Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F13
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    30   0.38 
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   3.5  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   3.5  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    27   4.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    26   8.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   8.1  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 662 CTKKYDQYDDYVIHINECTMNVKLQHFVCP 751
           CT  +D + DY   I   T++  ++ FVCP
Sbjct: 161 CTNSWDIFRDYFEFIGTSTLSPSVEEFVCP 190


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 467 VGCSQSYSTKGMHTCKTTCTIEQNDLQRSCSDETLIAND 583
           +G  ++  T  +H C+TT     N +    +  T+ AND
Sbjct: 645 LGLQENEETDNLHACRTTTHSSVNSINSHGNPRTVDAND 683


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 689 DYVIHINECTMNVK--LQHFVCPICHEMYTEKLLYLKHLRITHFINNSPKTXIID 847
           D +++IN     +K  L+ F C  CH     K L  +H+         PK+   D
Sbjct: 127 DNIVYINRLLEKIKNELESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYD 181


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 FINTSSDQPLTKHHEISDETDDSDVDSIKCV 469
           FINT  ++PL +H+   D  + S V  ++ V
Sbjct: 68  FINTLCEKPLIRHNNNFDPAEASSVSPVEIV 98


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 653 CVLCTKKYDQYDDYVIHINECT-MNVKLQHFVCPICHEMYTEKLLYLKHLRITHFIN 820
           C LC    +++D + I IN C  +N     F+  +C    T +LL+   LR+ +  N
Sbjct: 174 CRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLLC----TIQLLFHSILRLGYHFN 226


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 728 KLQHFVCPICHEMYTEKLLYLKHLRITHFINNSPKTXIIDMVRTAL 865
           K+QH     CH   T+  LYL  L + + +N + +  ++ + + AL
Sbjct: 651 KIQHV--EYCHMEETQLSLYLSVLELKNLVNANRENILMQLRKAAL 694


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 662 CTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMYTEKLLYLKHLRITHFINN 823
           CTK + + +    H    T N K   F+CP C   +T   +  +H+   H   N
Sbjct: 24  CTKSFTRKEHARRHFRSHT-NSKA--FICPHCSSSFTRSDVLNRHVNQKHVKQN 74


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 653 CVLCTKKYDQYDDYVIHINECTM-NVKLQHFVCPICHEMYTEKLLYLKHLRITHFIN 820
           CVLC +K+  +   V HI +  M N  L++      HE+ +   L +  +R T  ++
Sbjct: 406 CVLCERKFQSWGHVVKHITQSIMHNNNLKN------HELVSSAELLMHRVRQTESVD 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,406
Number of Sequences: 5004
Number of extensions: 57025
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)