Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F13
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.30 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 653 CVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMYTEKLLYLKHLRITH 811
           C+LC K +DQ + Y  H+       +   + C IC + +       +H R TH
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGKEGE-DPYRCNICGKTFAVPARLTRHYR-TH 114



 Score = 25.0 bits (52), Expect = 0.92
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 653 CVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMYTEKLLYLKHLRITH 811
           C +C+K + Q    VIH+   T     + +VC  C + +T       H R TH
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGE---KPYVCKACGKGFTCSKQLKVHTR-TH 226



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +2

Query: 650 SCVLCTKKYDQYDDYVIHINECTMNVKLQHFVCPICHEMYTEKLLYLKHLRITH 811
           +C +C K +    ++V+ +++   +   + + C +CHE +  K     H++ TH
Sbjct: 233 TCDICGKSFGY--NHVLKLHQVA-HYGEKVYKCTLCHETFGSKKTMELHIK-TH 282


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 740 FVCPICHEMYTEKLLYLKHLRI 805
           F CP CH+ +T       H+R+
Sbjct: 10  FECPECHKRFTRDHHLKTHMRL 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,920
Number of Sequences: 438
Number of extensions: 3900
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)