Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F12
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_20198| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)                      29   3.6  
SB_44711| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)           29   6.2  
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 289 GEEFEEDRADGAKVKSVCTFEGNTLK 366
           G+E E+D  DG+K  S CTFEG T++
Sbjct: 25  GDEHEKDLRDGSKRISGCTFEGITMQ 50


>SB_20198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 241 LVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFG 420
           L    T K+ ++++ P +  E+   D   V+ VC  +          P G+E  YV EF 
Sbjct: 119 LAPLGTDKSAQIRYAPVKVIEQKENDQLLVQPVCYMDA--------IPVGVEDGYVHEFI 170

Query: 421 PEEMKAVMTAKDVTCT 468
           P+E     + +  T T
Sbjct: 171 PDEYLTASSVRGSTLT 186


>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
          Length = 1156

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +1

Query: 166 GLITRKAANAVTPTVELRKDGDEYNLVTS---STFKTTEMKFKPGEEFEEDRADGAKVKS 336
           GL+   A+  V+ T+  R+ GD  +  +S   S  + TE         +E   DG     
Sbjct: 322 GLVKGSASRRVSNTLHTRRQGDARDPTSSWPPSWIRVTE---------DEGAEDGGHELR 372

Query: 337 VCTFEGNTLKQVQKAPDGLEV 399
           VC FEG + ++    P  +EV
Sbjct: 373 VCVFEGFSRQKQHLKPTAMEV 393


>SB_44711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 714

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +1

Query: 259 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 432
           F+  +   +PGE +E  R    K+   C F+  T  ++   +   G+  T VRE    E 
Sbjct: 180 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 239

Query: 433 KAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSRTSR 543
           K  +   D  C R  + +  ++T  + V A     S+
Sbjct: 240 KLTLAKTDEIC-RAAENEIVNNTSETDVNAVSKFESK 275


>SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)
          Length = 1019

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 701 LPWSLNLFKFRHRHSLLQFER-*TMTDVKTK 612
           LPW+++  KFR +HSLL   R  +  DVK K
Sbjct: 275 LPWAISHGKFRDKHSLLHTLRDNSSNDVKEK 305


>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +1

Query: 259 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 432
           F+  +   +PGE +E  R    K+   C F+  T  ++   +   G+  T VRE    E 
Sbjct: 550 FRFNQRMQEPGESYEHYRTALGKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 609

Query: 433 KAVMTAKDVTC 465
           K  +   D  C
Sbjct: 610 KLTLAKTDEIC 620


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,472,759
Number of Sequences: 59808
Number of extensions: 492385
Number of successful extensions: 1270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)