Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_F10
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 54 2e-08
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 30 0.36
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 28 1.4
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 28 1.9
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 4.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.8
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun... 26 7.7
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 7.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 7.7
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 54.4 bits (125), Expect = 2e-08
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 3/172 (1%)
Frame = +1
Query: 232 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCV---DLQET 402
VS+PGK IL GEH+VVYG TA+A ++ LRS ++ N V + +LQ
Sbjct: 7 VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTNNNEIVIVMSDIGTERRWNLQSL 66
Query: 403 IPLEPTVKSLFHPKLAPGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKN 582
TV+++ HP +P L L++ + L N +
Sbjct: 67 PWQHVTVENVQHPASSPN-------------------------LDLLQGLGELLKNEENG 101
Query: 583 SLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALI 738
+ S + +F S P + +++ S++ +GAG GSSA+ +V +A +L+
Sbjct: 102 LIHSAMLCTLYLFTSLSSPSQGCTLTISSQVPLGAGLGSSATISVVVATSLL 153
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 30.3 bits (65), Expect = 0.36
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 640 VKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLKLKSSSGNFD 777
V+ M + G++L I +G +FAV LA AL + SS+ N D
Sbjct: 158 VRQMKVKPGTKLVIEGASGGVGTFAVALAKALECEVTTISSTENLD 203
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 262 GEHSVVYGKT-AIAVSLGLRSSIVIKEVNTPHEPAVH-IHLPCVDLQETIPLEPTVKSLF 435
GE S YG T A ++L ++ ++ ++ HE ++ + + C P P + +
Sbjct: 22 GESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHC---DANYPDAPPIVTFV 78
Query: 436 HPKLAPGITGKFSWRLPHKIDHDYHLRR 519
PG+ G+ PHKID H +R
Sbjct: 79 SRINLPGVDGETGKVNPHKIDCLRHWKR 106
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 529 YLHLIKPNFDSLPN-NQKNSLRSFLYVFSGIF 621
+LH + NF P Q+N + SFLY FS +
Sbjct: 89 FLHAMAANFPKNPTPTQQNDMSSFLYNFSKFY 120
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 421 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 323
L P+ DPR + L EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 463 GKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPN 570
GKF + L +D+ + +E + PNFDS N
Sbjct: 54 GKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGN 89
>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 709 FAVCLAGALIQLLKLKSSSGNFD 777
F +CL G + LL +KSS D
Sbjct: 49 FGICLIGTFVSLLMIKSSKKKSD 71
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 484 PHKIDHDYHLRRVEEYLH 537
P IDHD H++R+ E L+
Sbjct: 22 PDPIDHDLHVQRLRELLY 39
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +1
Query: 481 LPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 585
L K+ + + ++ L++P+ LPN KN+
Sbjct: 1790 LDQKLSYQFKFENSVKFFRLMQPSLGVLPNTNKNT 1824
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,869,143
Number of Sequences: 5004
Number of extensions: 88935
Number of successful extensions: 288
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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