Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_F10
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 31 1.2
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14) 31 1.6
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 31 1.6
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_26154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05) 29 6.3
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40) 28 8.3
SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 784 NMHRNSPKNSSISTAVSMLLLDRRQKTPNCQYPRQ 680
N R SP S+ S ++ L D Q+ PN Q+PR+
Sbjct: 429 NTSRKSPSESNSSPSLDALNADSTQRIPNEQFPRK 463
>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
Length = 620
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = +2
Query: 353 TNQQSTYICRAWI----YRRPFHWSRQSKVCSILNWHQG*PANSLG-DYPTKSTMTITCE 517
T S++I WI F W+ K+ S NW G P G D +TI +
Sbjct: 58 TQSLSSHISMFWIGLSRSNGAFRWTDGEKLGSFANWAIGSPVMDAGTDCVAMVNLTIVSK 117
Query: 518 GWRN 529
WRN
Sbjct: 118 TWRN 121
>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
Length = 1705
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2
Query: 767 PEELFNFNSCINAPARQTA-KDAELPVPAPMVSS-DPIEISIDFTGRYVLPKIPENTYRK 594
P + N N QTA KDAE V P+ S D + S DFT + +I + RK
Sbjct: 634 PSKEMNKNKNKGLKGDQTAAKDAEKEVDTPVYESQDMLTSSGDFTSAEIGVEIEPSKKRK 693
Query: 593 LRKE 582
++KE
Sbjct: 694 MKKE 697
>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -2
Query: 347 VFTSFITMELLRPRLTAIAVFPYTTECSPCKMTFPGA-----ETLTVNKLSTAVNIVLLM 183
V T FIT+ELLR RL A F T S F G+ E V T +NI+L++
Sbjct: 79 VKTDFITIELLRGRLRYTANFGSTANISGFHEVFMGSHLADNEWHQVELRRTGLNILLIL 138
>SB_26154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 823 SFSVSVNLGCSDRNMHRNS-PKNSSISTAVSMLLLDRRQKTPNCQYP 686
SFS + L D+ ++ N P N SI V +L Q PN YP
Sbjct: 34 SFSKTTPLVNKDKTLNANYLPANGSIPGIVPNVLYSNNQMVPNLAYP 80
>SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +2
Query: 8 LQEELKTIHAFTQK 49
L+EE+KTIHAF+QK
Sbjct: 38 LEEEMKTIHAFSQK 51
>SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05)
Length = 341
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 633 STGKVYGYFDGI*AHHW--RGYWQFGVFCRLSSR 728
S+ +VYG F I HW G++ GVF R SR
Sbjct: 285 SSSEVYGPFSSIDMLHWTNEGHFSDGVFVRKESR 318
>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1037
Score = 28.7 bits (61), Expect = 6.3
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Frame = +1
Query: 406 PLEPTVKSLFHPKLAPGITGKFSW-----RLPHKIDHDYHLRRVEEYLHLIKPNFD---S 561
P E S FH +A G K W + DH + ++Y +L N+ +
Sbjct: 242 PTEYLKASSFHLLIANGSDIKCIWSFGDGKADKMFDHAHGGSFKQDYQYLNPGNYSVVVT 301
Query: 562 LPNNQKNSLRSFLYVFSGIFGSTYL---PVKSMDISMGSELTIGAGTGSSASFAVCLAGA 732
N ++N R+ + + + PV+ + S E TIG TGS ++ +A
Sbjct: 302 CGNRKRNITRTTFAIVQEVISKLEIKPIPVQIYNQSFKIEWTIG--TGSQVTYTASIARK 359
Query: 733 LIQLLKLKSSSG 768
++++ + SSG
Sbjct: 360 GLEVITIDVSSG 371
>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
Length = 1120
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 670 ELTIGAGTGSSASFAVCLAGALIQLLKLKSSSGNFDAYYDQSSQDLRIP--KRRLYRNG 840
++T G A + G LI L + NF+ YY + L++P +RRL G
Sbjct: 159 DMTPQTWPGKIIGGACAICGVLIVALPISVIGSNFNLYYAHAQARLKLPVKQRRLVLGG 217
>SB_36328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1526
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 691 TGSSASFAVCLAGALIQLLKLKSSSGNFDAYYDQSSQDLRIPKR 822
+G A L G L+ L + + NF YY + LR+PK+
Sbjct: 508 SGRIVGSACALWGVLMITLPISIVNSNFSLYYAHAKAMLRLPKK 551
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,979,639
Number of Sequences: 59808
Number of extensions: 680129
Number of successful extensions: 2070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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