Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F07
         (821 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   3.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   5.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.1  

>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 348 PCDPSSWRIVARSPLRLR 401
           PCDP   R+ + +PL LR
Sbjct: 57  PCDPVGRRLKSLAPLVLR 74


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 526 KAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 639
           K I AL+  W  +C +    + P+T  T +   + P C
Sbjct: 16  KNISALNGAWRWECKSNYCQKAPITPDTEATGLSLPAC 53


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 472 SNRSNRDGQPVP*TLHRQAPSCIHRRRSG 386
           +N+SN +GQ +  +LH+  P+ +H  R G
Sbjct: 135 TNKSNGNGQIMLNSLHKYKPT-VHLVRVG 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,356
Number of Sequences: 336
Number of extensions: 4435
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)