Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_F02
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)               27   6.2  
SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)                     27   6.2  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             27   6.2  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +1

Query: 112  KPNSLSHPAGV--EKGLPSPALCPAGTMNPWR 201
            KP     P G    +G P P  CP G+ NP+R
Sbjct: 2015 KPYGTDCPNGTYCPEGTPIPVPCPKGSYNPYR 2046


>SB_29880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 239 PAMPEALSRHHRNGNTDKMPFNH 307
           P + E L+ H R    D MPF+H
Sbjct: 2   PILEEGLALHQRQATKDLMPFHH 24


>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
          Length = 535

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   GRPMISSCFEVTQRTNSAKNVQIHDSIP 85
           GRP+IS C   T++ +   +  I DS+P
Sbjct: 366 GRPVISGCNTSTEKISEFVDYHIKDSVP 393


>SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 623

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +2

Query: 2   GRPMISSCFEVTQRTNSAKNVQIHDSIPCFGLLHNGRSPTHFHIQLGWKKGCHRRHCVLQ 181
           GRP+IS C   T++ +   +  I D +P   +  + +   HF + +    G   +  +L 
Sbjct: 336 GRPVISGCNTCTEKISEFVDFHIKDLVP--SIPSHIKDTKHF-LNIVRDMGTFPQGAILV 392

Query: 182 ER*ILGVYL 208
           +  ++G+YL
Sbjct: 393 KAYVVGLYL 401


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 239 PAMPEALSRHHRNGNTDKMPFNH 307
           P + E L+ H R    D MPF+H
Sbjct: 212 PILEEGLALHQRQATKDLMPFHH 234


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 151 GLPSPALCPAGTMNPW 198
           G  +P  CP GT NPW
Sbjct: 232 GSATPIPCPTGTFNPW 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,127
Number of Sequences: 59808
Number of extensions: 252000
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)