Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_E23
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       78   8e-17
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 78.2 bits (184), Expect = 8e-17
 Identities = 64/213 (30%), Positives = 95/213 (44%), Gaps = 12/213 (5%)
 Frame = +2

Query: 179 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 358
           V G  V      F    L+  +L  I   G++ P+ VQ   +P  + G D++  A++G G
Sbjct: 186 VSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSG 245

Query: 359 KTAVFVLATLQQL-EPSESHVYVLVMCH--------TRELAFQISKEYERFSKYMSGVRV 511
           KTA F +  +  L E S   V     C         TREL  QI ++  +FS   S ++ 
Sbjct: 246 KTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFS-LNSILKT 304

Query: 512 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 691
            V +GG  +      L   C HI+V TPGR+L                +LDE D+ML+  
Sbjct: 305 VVAYGGTSVMHQRGKLSAGC-HILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMG 363

Query: 692 XMRRDVQEIFRNT--PHG-KQVMMFSATLSKEI 781
            +    + +   T  P G +Q +MFSAT   E+
Sbjct: 364 FLPSIEKMVDHETMVPLGERQTLMFSATFPDEV 396


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 395 AAAMLPKQTRLSYPYRTWLDKVCPYRG 315
           A  + P++T   + YR W  ++  Y G
Sbjct: 169 AITIFPQRTDGKHDYRVWNHQLISYAG 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,992
Number of Sequences: 438
Number of extensions: 4282
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)