Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_E20
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    69   8e-13
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    28   1.9  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   2.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   4.5  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
 Frame = +3

Query: 219 FSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVY 398
           F   N +  +A+LA YP   +  A++PLLDLAQRQ G W+P +AM+++A +  +    V+
Sbjct: 7   FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVH 66

Query: 399 EVATFY-TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGK--FS 569
            +   Y   F  RP  K  V++C +  C     +      +  +N +    S   K  F 
Sbjct: 67  SLILAYPNDFFWRP-KKPRVRICNSWMCQQAAEE------QGNSNWDSQCRSVATKYGFD 119

Query: 570 VSEVECLGACVNAPMIQVNDDYY 638
           V    CLG C   P + +ND  Y
Sbjct: 120 VENTGCLGNCFQGPAMWINDKIY 142


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 508 MQLNRKQTVRLEATVLVASFLFQRLN 585
           MQ++  +TV+L  T+  A+ L QRLN
Sbjct: 201 MQIHANKTVQLSQTIQKATLLLQRLN 226


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 129 RSIQTTASRQHDS-LFVHRDTPEDNPSIPFEFSQANQKRV-EALLAIYPEGHKRGAMIPL 302
           R +   A++QH + + +H   P    + P +     + RV EA+L  YP+G    A + L
Sbjct: 203 RELTVRAAKQHGARVLIH---PVVGMTKPGDIDHFTRVRVYEAILQRYPKG---SAKLSL 256

Query: 303 LDLAQRQSG 329
           L LA R +G
Sbjct: 257 LPLAMRMAG 265


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 462 CTTTPCWLRGSDAILNAIKQETNCEVGGN 548
           C T   W+ G  A+  A   + NCE G N
Sbjct: 508 CETGKSWMYGGMALRMAAALQLNCEQGSN 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,432
Number of Sequences: 5004
Number of extensions: 75738
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)