Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_E20
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 198 6e-51
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 33 0.29
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537... 29 3.6
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 29 4.7
12_02_0129 - 13981684-13982529 29 6.2
12_02_0112 + 13783758-13784717 29 6.2
08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444 29 6.2
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981 29 6.2
02_01_0353 + 2545982-2549833 29 6.2
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 28 8.2
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 198 bits (482), Expect = 6e-51
Identities = 102/242 (42%), Positives = 147/242 (60%), Gaps = 11/242 (4%)
Frame = +3
Query: 93 RXGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPE 272
R + L +++ S +A+ + S H D+PE+NP +P+EF++AN K+V +L+ YP
Sbjct: 7 RLAARRLLGLATSSASESAAARRLSRSPHLDSPENNPDMPWEFTEANMKKVNEILSHYPS 66
Query: 273 GHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 452
+K+ +IP+LDLAQ+Q GGW+P++AM+ +A+I+ + +RVYEVATFYTMF R +GKYH
Sbjct: 67 NYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYH 126
Query: 453 VQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVND- 629
+ VC TTPC +RGS I A+ + + + G FSV E+EC+G CVNAPMI V D
Sbjct: 127 LLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADY 186
Query: 630 ---------DYYEDLSVXDTKEIISKLKKDEKPKPGPR-SGRFASEPLGGLTSLTEXPTG 779
+YYEDL+ EI+ LK+ E P G + R P GG T+L
Sbjct: 187 SKGSEGYTYNYYEDLTPKRVVEIVEMLKRGETPPRGTQHPERKNCGPAGGNTTLHADMRR 246
Query: 780 AW 785
W
Sbjct: 247 QW 248
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 510 AIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY--YEDLSVXDTKEIISKL 683
A+K EV G+ P G F + + + P I +ND Y +E D +E+ +L
Sbjct: 229 AVKSSETSEVKGSLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEVDDRL 288
Query: 684 KKDE 695
+++E
Sbjct: 289 EEEE 292
>11_06_0617 -
25552308-25552978,25553384-25553454,25553691-25553727,
25553807-25553927,25554309-25554428,25554834-25555130,
25555286-25555288
Length = 439
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 321 VVVPDPVKESWHLACDLQGKWPTKPLLSFD 232
VVV D V +S HLA + G W + P FD
Sbjct: 313 VVVADVVMDSVHLAIEFTGNWSSHPDDHFD 342
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 450 HVQVCTTTPCWLRGSDAILNA-IKQETNCEVGGNSP 554
H+ C +TP W R SD LN KQ+ + E G +P
Sbjct: 289 HMITCPSTPEWKRSSDLDLNGEAKQDDDDENGDLAP 324
>12_02_0129 - 13981684-13982529
Length = 281
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 117 RISSRSIQTTASRQHDSLFVHRDTPEDN 200
R++ R + + A R HD+ +HRD DN
Sbjct: 81 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 108
>12_02_0112 + 13783758-13784717
Length = 319
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 117 RISSRSIQTTASRQHDSLFVHRDTPEDN 200
R++ R + + A R HD+ +HRD DN
Sbjct: 119 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 146
>08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444
Length = 391
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -2
Query: 701 GLLVLL*FADNFFCIXYRQVLIVIIIDLYHWGVH 600
GL +LL A F CI Y+ LI+I++ L H G+H
Sbjct: 344 GLSLLLANAFLFECIQYQLHLILILLVLDHSGLH 377
>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
Length = 1158
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 651 VXDTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEXPTGAW 785
V D + + + DE P PG + A+ GG+T P+GAW
Sbjct: 217 VGDATPSVRRNRWDETPTPGRMADADATPAAGGITP-GATPSGAW 260
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 651 VXDTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEXPTGAW 785
V D + + + DE P PG + A+ GG+T P+GAW
Sbjct: 241 VGDATPSVRRNRWDETPTPGRMADADATPAAGGITP-GATPSGAW 284
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 708 GPRSGRFASEPLGGLTSLTEXPTG-AWLRSTXCTQGVN 818
G RFAS LGG TSL P G A + T TQ VN
Sbjct: 612 GSTPARFASSALGG-TSLFRTPPGDALVFQTYSTQSVN 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,935,832
Number of Sequences: 37544
Number of extensions: 524148
Number of successful extensions: 1260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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