Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_E19
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1376 - 29687417-29687536,29687622-29687688,29688448-296885... 31 1.4
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 30 2.4
02_05_0770 - 31623415-31623960,31624467-31624709,31624808-316249... 30 2.4
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 29 3.2
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 4.2
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 5.6
10_08_0002 - 13986969-13989338 29 5.6
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 29 5.6
12_01_0812 - 7460448-7460507,7460595-7460672,7460772-7460981,746... 28 7.4
12_01_0198 - 1461305-1463812 28 7.4
11_01_0192 - 1523572-1526097 28 7.4
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 28 7.4
05_01_0457 - 3623163-3623172,3624806-3625183,3625316-3625332 28 9.7
>06_03_1376 -
29687417-29687536,29687622-29687688,29688448-29688504,
29689365-29689435,29690326-29690385,29690470-29690601,
29690828-29690986
Length = 221
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 110 QIDYEXDISLIREWLAKEDYLPQDLGDVLLKKFIHSCYGSLEKTKQCIDKFCVG 271
++D + IR+ LAK++ +L L K IHS LE K + K+C+G
Sbjct: 152 RLDLNLERGRIRDELAKQNEETTEL-TTKLDKEIHSLKAQLEAAKYDVIKYCIG 204
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -2
Query: 226 SVATVNEFFQQHVTKVLRQVILLSEPFSDQRNVXFVVD-LHRFLLXHKNIIIKYFLIPAA 50
+ A ++ + HV KV I L + + D +++F+L H+ II IPAA
Sbjct: 290 NTAIPEDYARVHVAKVHSDHIFLELDIPAPEGIELLGDAVNQFILWHRRDIILTAAIPAA 349
Query: 49 RTTRPS 32
++ PS
Sbjct: 350 GSSTPS 355
>02_05_0770 -
31623415-31623960,31624467-31624709,31624808-31624906,
31625058-31625234,31625441-31625512
Length = 378
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +2
Query: 476 NIPLFPRGHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYNSPAYYDK 655
N+P + LID F L S +++ K L P R+ +YN+P +++
Sbjct: 138 NLPHDQSQMVWLIDFAGFSL---SNISLHVTKLTADVLQGHYPERLGVAILYNAPKFFES 194
Query: 656 LFSLVKPVLPQEICDMIKF 712
+ + P+L + + +KF
Sbjct: 195 FWKIASPILEPKTFNKVKF 213
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 116 DYEXDIS-LIREWLAKEDYLPQDLGDVLLKKFIHSCYGSLEK 238
DYE D+ L++ W+A D++P G V L+K HS + L +
Sbjct: 429 DYEIDVEMLVKLWMA-NDFIPSKDG-VCLEKIGHSIFNELAR 468
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 250 ALLRFFQ--TSVATVNEFFQQHVTKVLRQVILLSEPFSDQ 137
AL ++FQ T + +EFF +TK R+ L+ E SDQ
Sbjct: 115 ALPKYFQVGTVIEPASEFFSSRLTKRERKTTLVDELLSDQ 154
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +2
Query: 455 QADYWLNNIPLFPRGHIVLIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYN 634
+ D +LN + L+D + + + + VN+ + +Y M VR+ + +
Sbjct: 778 EQDMYLNFNLVLSDVSAFLVDGDYHWNERSNEVNLLIQLESALYPSTRMAVRVPSLGFHF 837
Query: 635 SPAYYDKLFSLVK 673
SPA Y +L + K
Sbjct: 838 SPARYHRLMEIFK 850
>10_08_0002 - 13986969-13989338
Length = 789
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +2
Query: 14 IAFISIGRAGCARGRN*KIFYNNIFVXQ*KTMQIDYEXDISLIREWLAKEDYLPQDLGDV 193
I +SI +A AR +N I + D E +L + + +E+ L DL V
Sbjct: 215 IGKVSISQASLARQKNEGIHSQQREAEDCSRIGFD-EHAYALDLDLIGEEEVLEFDLTPV 273
Query: 194 LLKKFIHSCYGSLEKTKQ 247
+IH+C G EK ++
Sbjct: 274 YRANYIHTCLGLGEKFRE 291
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 152 LAKEDYLPQDLGDVLLKKFIHSCYGSLEKTKQCIDKFCV 268
L K++ L D ++ ++KF++ + KTKQ I C+
Sbjct: 815 LKKDEPLESDCFNMAIRKFMYEKIEMIHKTKQAISNHCL 853
>12_01_0812 -
7460448-7460507,7460595-7460672,7460772-7460981,
7461095-7461142,7461270-7461455,7461653-7461656,
7461766-7461893
Length = 237
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +2
Query: 509 LIDAKHFYLKIVSRVNIFFFKQFLVYLLEAMPVRIKQIHVYNSPAYYDKLFSLVKPVLPQ 688
L+D + KIV FFF Y+L V ++Q+ N ++ D+++S +K + +
Sbjct: 61 LVDRWRNHKKIVISETRFFFYLDRYYILRKSLVPLEQL---NLCSFRDQVYSELKDKITR 117
Query: 689 EICDMI 706
+ DMI
Sbjct: 118 TVVDMI 123
>12_01_0198 - 1461305-1463812
Length = 835
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = -2
Query: 604 WHRLKQIYQELLKEKYIDTGHYLQIEVFRVDQHNVSSWEQR-----DVVEPVVCLHRECL 440
W + +L +YI+ G ++ R D W+QR V + + LH ECL
Sbjct: 603 WGFCSEGTHRILVYEYIENGSLAKVLFDRRDSSKFLGWKQRFNIALGVAKGLAYLHNECL 662
Query: 439 Q*IV 428
+ I+
Sbjct: 663 EWII 666
>11_01_0192 - 1523572-1526097
Length = 841
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = -2
Query: 604 WHRLKQIYQELLKEKYIDTGHYLQIEVFRVDQHNVSSWEQR-----DVVEPVVCLHRECL 440
W + +L +YI+ G ++ R D W+QR V + + LH ECL
Sbjct: 609 WGFCSEGTHRILVYEYIENGSLAKVLFDRRDSSKFLGWKQRFNIALGVAKGLAYLHNECL 668
Query: 439 Q*IV 428
+ I+
Sbjct: 669 EWII 672
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 152 LAKEDYLPQDLGDVLLKKFIHSCYGSLEKTKQCIDKFCV 268
+ K+ L +D ++ ++KF++ SL KT + I K C+
Sbjct: 59 ILKDGPLDRDCFNMAIRKFMYENIQSLHKTSEAITKHCL 97
>05_01_0457 - 3623163-3623172,3624806-3625183,3625316-3625332
Length = 134
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -1
Query: 329 FSICLLQGLWTCTALGY-----WSDPRRTCRCIASF 237
F+ +L GL C LGY WSD +R C ++ F
Sbjct: 10 FAKAVLAGLDKCEELGYEDVELWSDSQRACGVLSDF 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,991,425
Number of Sequences: 37544
Number of extensions: 429859
Number of successful extensions: 1159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -