Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_E16
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.6  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 ILIHLPYHNCVRWFSRIHSFLKSPAF 107
           I+ HL  H  V W+S+  +F   P +
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTY 198


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 551 PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLH 441
           PN++P S    +++      P  M  D W+S  + LH
Sbjct: 57  PNVRPISSHQIANNVTMQLLPKLMEFDDWTSV-MELH 92


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 174 WISIFVHIGICWRGSSRQNVRPNKRR 251
           W+ + V +GI  +G +   VR N  R
Sbjct: 4   WLLLVVCLGIACQGITSVTVRENSPR 29


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 432 IKAFGRIIITNMFDRFAHNFLIIH 361
           +K   RI +   +D F H   ++H
Sbjct: 510 VKGMVRIFLGPKYDEFGHEVDLVH 533


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 545 CSVMQQMRQKNACR 586
           C +  Q R+KN CR
Sbjct: 389 CELHMQPRKKNCCR 402


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 545 CSVMQQMRQKNACR 586
           C +  Q R+KN CR
Sbjct: 389 CELHMQPRKKNCCR 402


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 432 IKAFGRIIITNMFDRFAHNFLIIH 361
           +K   RI +   +D F H   ++H
Sbjct: 510 VKGMVRIFLGPKYDEFGHEVDLVH 533


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 432 IKAFGRIIITNMFDRFAHNFLIIH 361
           +K   RI +   +D F H   ++H
Sbjct: 136 VKGMVRIFLGPKYDEFGHEVDLVH 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,661
Number of Sequences: 438
Number of extensions: 3854
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)