Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_E12
         (908 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   5.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   7.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   7.6  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 618 GNLC*HWWPGHPDPGNQGICG 680
           G  C    P HPDPG+  + G
Sbjct: 128 GKPCLSGGPKHPDPGSLQVPG 148


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 792 CKPXICYLPTC 824
           C P +C LP C
Sbjct: 163 CDPAVCVLPDC 173


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 675 RFLDFLDLGVQATNVSIGFLWSLFKL 598
           +++  +DLG  A  V  G L + FKL
Sbjct: 83  KYIILIDLGEVAVTVLAGILTTPFKL 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,583
Number of Sequences: 336
Number of extensions: 4288
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)