Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_E11
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0893 + 22327485-22327671,22327756-22328627                       28   4.2  
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885...    27   7.3  
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075...    27   7.3  

>08_02_0893 + 22327485-22327671,22327756-22328627
          Length = 352

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 105 WYKQCGSIYRLRLW*LFGYCFRC 173
           +Y +C   + +RLW LF  CF C
Sbjct: 136 FYDECKRRFSVRLWKLFTDCFNC 158


>03_02_0491 +
           8854438-8854657,8854897-8854942,8855268-8855307,
           8856025-8856090,8856237-8856318,8857036-8857595,
           8857681-8857771,8858300-8858316
          Length = 373

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 105 WYKQCGSIYRLRLW*LFGYCFRC 173
           +Y +C   + +RLW +F  CF C
Sbjct: 225 FYDECKRRFNVRLWKVFTDCFNC 247


>01_03_0220 -
           13905808-13905831,13906694-13906885,13906960-13907519,
           13910007-13910187
          Length = 318

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 105 WYKQCGSIYRLRLW*LFGYCFRC 173
           +Y +C   + +RLW +F  CF C
Sbjct: 134 FYDECKRRFNVRLWKIFCDCFNC 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,976,688
Number of Sequences: 37544
Number of extensions: 204839
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)