Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D19
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   5.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   8.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 779 GMTGLRLASAXRACCRPNALRIRSAFTKELCTWNLSRIHADVTSSRASTRS 627
           G+ GL  ++   + C P A    +  +K       S   A  TSS AS+R+
Sbjct: 142 GLHGLSSSAPTGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRN 192


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 272 RRKHQNLKQKRQYLWIMKKTLLRYPKVP*NAP*N 373
           R+   N    R+YL ++K    RY   P NAP N
Sbjct: 437 RKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLN 470


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 266 QKRRKHQNLKQKRQYLWIM 322
           +K+R+ +NL Q +  +W +
Sbjct: 7   KKKRRKKNLNQNQMMIWAL 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,112
Number of Sequences: 438
Number of extensions: 5145
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)