Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D11
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    26   0.41 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   6.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.6  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.7  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 401 RAKSLAPLDTIYSYSYGEPIPY 466
           RA+     +  ++Y YG+PIPY
Sbjct: 230 RARRKEIAEIAFAYKYGDPIPY 251


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 364 SVGANSTGLIFESLGCFGAQEVIDG 290
           S G N  G I  SLG  G++ V  G
Sbjct: 213 SFGTNLVGGIVRSLGTLGSRVVESG 237


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 327 LSKMRPVEFAPTLRL*STGLALW 395
           LS++R +E A  LRL    + +W
Sbjct: 142 LSRLRRIEIATCLRLSEKQVKIW 164


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 193 HIRVRHESSYRPRCRTVNQF 134
           ++++ H+  YR  CR +  F
Sbjct: 25  YLKIYHKEKYRKFCRILKYF 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,678
Number of Sequences: 336
Number of extensions: 3823
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)