Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D11
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    34   0.021
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    29   1.0  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   4.1  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   7.2  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 507 PYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSS-ASGMT*TCSR 683
           P +A+  A T   SIT+ P+SS  ++ SR   +  R  SPT  +   +S AS    T S 
Sbjct: 141 PSSAASGARTQRTSITNDPQSSQSSSVSRNPASS-RAGSPTRDNAPAASPASSEPRTFSS 199

Query: 684 FTRRTGSRPPVWPSRMQQL 740
           F  + G  PP W  R   L
Sbjct: 200 FEDQYGRLPPGWERRTDNL 218


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 308 RSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPYRFSNDAY 487
           ++  +K +ED T    A +    +  R  + R+++L P   +  Y YG+P P R S  A 
Sbjct: 178 KNHLSKIYEDHTSEKGASSVISSNITRQGIKRSRTL-PW-AVDPYRYGDPDPKRTSTSAD 235

Query: 488 IAK 496
           I++
Sbjct: 236 ISQ 238


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 507 PYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGMT*TCSRF 686
           P A+S +A+++ P  +S   + +D+ATS A ++ V   S +V   +   AS  T + +  
Sbjct: 95  PVASSSVAASVTPVSSS---AVVDSATSAAASSSVIPTSSSVVASSSEVASSTTSSAAAS 151

Query: 687 TRRTGS 704
              TGS
Sbjct: 152 ATSTGS 157


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 552 TSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGMT*TCSRFTRRTGSRPPV 716
           +S    S+ AAT+ +  +PV++P P      R  A+  +   S  +  T   PPV
Sbjct: 200 SSYASGSVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPPV 254


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +3

Query: 546 SITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGMT*TCSRFTRRTGSRPPVWPS 725
           S++  P S   +  ++A  TP+      V   T  +++G +   S   +   S PP  PS
Sbjct: 109 SLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSSPPHEPS 168

Query: 726 RMQQLNC 746
                NC
Sbjct: 169 VTFCQNC 175


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 635 PLYKELSIRDDVNLLSFYAKNRLAAAGLAVENAT-VKLLPWRPSRKF 772
           P++K L+  DD NL   +A +  A   L     T VK    RP RK+
Sbjct: 179 PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRP-RKY 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,065
Number of Sequences: 5004
Number of extensions: 62177
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)