Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D10
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   317   1e-87
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    30   0.34 
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    29   0.79 
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   4.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.2  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   7.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   9.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  317 bits (778), Expect = 1e-87
 Identities = 142/220 (64%), Positives = 177/220 (80%), Gaps = 2/220 (0%)
 Frame = +2

Query: 161 DEMTRIIWDLIKEKLIIPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCAT 340
           DEMTR+IW +I+EKL++P++DI+L  YDLG+E RDKT+DQ+T+D A+AI K +VGIKCAT
Sbjct: 26  DEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKCAT 85

Query: 341 ITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAH 520
           ITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW  PI IGRHA 
Sbjct: 86  ITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAF 145

Query: 521 ADQYKATDFVVPGAGTLEIIFKPESGEAIKHV--VHEYKGAGVALAMFNTDASIIDFAHS 694
            DQYK+TD V  G G LE+ F P+   + K    V+E+ G+GVA++M+NTD SI  FAHS
Sbjct: 146 GDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRGFAHS 205

Query: 695 SFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDKEY 814
           SF+ AL +K PLYLSTKNTILKKYDGRFKD FQ++Y+ +Y
Sbjct: 206 SFQMALQKKMPLYLSTKNTILKKYDGRFKDTFQEVYESDY 245


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
 Frame = -3

Query: 634 TLVLMNYMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPC 479
           +L   +Y + C T F    + K  ++ +    CF        + I   +  +D GFV P 
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296

Query: 478 YKSRYILANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NSLLI 350
           Y   YIL N +    S T  + +   + F  F+    F   SLL+
Sbjct: 297 YCISYILKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGSLLL 341


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 224 IELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEK 358
           IE    D+ GME  +K+      +  +++K+  VG+K    TP EK
Sbjct: 50  IEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGLKGILFTPFEK 95


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +2

Query: 590 ESGEAIKHVVHEYKGAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILK 760
           +SG+ + H V  Y+G  +  A+   D +  D      K  ++R Y    + +  I++
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVR 210


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 553 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 410
           D+K +   L+S +++S +   VPP  KSR I+A+ +   +S  K+  D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 721 FSVQSKLE*RMSKVNNRCISVKHSQ--CYTCTLVLMNYMFYCLTRFRFE 581
           F+ ++ L+  + + NN   +++ S   C TC  ++ N  F+C   F F+
Sbjct: 35  FTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFD 83


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 507 PMMMGLSHPVTSLGIFLQIIASLKTVP 427
           P +MG  + VT+   ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 740 TKNTILKKYDGRFKDIF 790
           T+ T+L   DG+FKDIF
Sbjct: 414 TQETLLGLLDGKFKDIF 430


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 200 KLIIPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 310
           +LI+ F D ELH +     N+   +     D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,875
Number of Sequences: 5004
Number of extensions: 69870
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)