Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D08
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    28   1.6  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   2.9  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   5.0  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    26   6.6  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.6  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   8.8  

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 570 ALSVTNTCLKSPVRSSAIQVSRDLPYFSRNACLMSPRS 457
           A S+  + + SP+  S +Q+S ++P    +A  M PRS
Sbjct: 430 APSMQPSAVSSPMSESHVQISSEMPRTGMSALPMRPRS 467


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 176 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 298
           QWGTD ++  ++  TR+ +Q++  F + E      +  ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = +3

Query: 99  IAMKTRASMKAQLKPMLKHWPPLVKVNGEPTNQSSTPSLSLAPISS*DRSSPSTKL*PEK 278
           +  K+    + Q     +H+  +V+ N    +QSS    +    +   + +P  K  P  
Sbjct: 244 VVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSPNT 303

Query: 279 TLRTRS 296
           T+RT S
Sbjct: 304 TIRTSS 309


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 490 LEECLLDVP*VDLGAAHHDADERLVVGADALHRVVQALSEET 365
           LEE  L+     L A+ +D D+   +    ++ V+ AL++ET
Sbjct: 10  LEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKET 51


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 480 ACLMSPRSISERLTTMRMSVLSLVPMPFIE*YRRSAKKPTLLFTHLAIASMPF 322
           A L   R+I +  T++ ++V  L+P+P  +  +  AK    + +H+    +PF
Sbjct: 102 AILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPF 154


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 221 RSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLYYSMK 400
           +SY QLR+   E       D  D I +  +   + G +A+  C+ S    F   LY +MK
Sbjct: 249 QSYVQLRKPLLENNLPYEIDGFDKILQCANSEADIGWIAMIHCIGSNGYAFPIHLYLNMK 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,282
Number of Sequences: 5004
Number of extensions: 53740
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)